Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2990 | 3' | -56.7 | NC_001493.1 | + | 105353 | 0.74 | 0.412728 |
Target: 5'- cCGGGUCGCGCAGUGuGCGAUCgGUCGa -3' miRNA: 3'- -GUUCGGUGUGUCGC-UGCUGGgCAGCa -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 68141 | 0.66 | 0.86051 |
Target: 5'- -cAGCCAUACauGGUGACGACUaccaGUCu- -3' miRNA: 3'- guUCGGUGUG--UCGCUGCUGGg---CAGca -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 113529 | 0.67 | 0.836661 |
Target: 5'- gCAAGCCccGCGCAGUGAgGgaccACCCGUg-- -3' miRNA: 3'- -GUUCGG--UGUGUCGCUgC----UGGGCAgca -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 84941 | 0.67 | 0.811138 |
Target: 5'- --uGCCACG-GGCGAUGACgCGUUGa -3' miRNA: 3'- guuCGGUGUgUCGCUGCUGgGCAGCa -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 27874 | 0.67 | 0.793296 |
Target: 5'- uGAGCuCACGaccacCGGCGuACGAUCCGUgGUa -3' miRNA: 3'- gUUCG-GUGU-----GUCGC-UGCUGGGCAgCA- -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 33152 | 0.68 | 0.765464 |
Target: 5'- aCAAGCUACugAuccugGcCGACGACCCGaUCa- -3' miRNA: 3'- -GUUCGGUGugU-----C-GCUGCUGGGC-AGca -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 110430 | 0.69 | 0.703838 |
Target: 5'- --cGCCACACaucgcGGCGAgcaccucgggucgaUGACCCGUCa- -3' miRNA: 3'- guuCGGUGUG-----UCGCU--------------GCUGGGCAGca -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 105954 | 0.7 | 0.623411 |
Target: 5'- gCAAGCCAUggcauguAUAGCGGCGcgggucggaagucACCCGUCa- -3' miRNA: 3'- -GUUCGGUG-------UGUCGCUGC-------------UGGGCAGca -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 79679 | 0.67 | 0.793296 |
Target: 5'- cCAAGCUACA-AGCGGCcaGGCUCGUCu- -3' miRNA: 3'- -GUUCGGUGUgUCGCUG--CUGGGCAGca -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 97564 | 0.67 | 0.793296 |
Target: 5'- gGAGCgACGCGGgGuugacaaauGCGGCCuCGUCGa -3' miRNA: 3'- gUUCGgUGUGUCgC---------UGCUGG-GCAGCa -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 53031 | 0.68 | 0.784152 |
Target: 5'- aGAGUgACGCGGCgGACGACCCu---- -3' miRNA: 3'- gUUCGgUGUGUCG-CUGCUGGGcagca -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 109148 | 0.68 | 0.78323 |
Target: 5'- --cGCCGCACGGggagagaUGGCGACCCGgUGa -3' miRNA: 3'- guuCGGUGUGUC-------GCUGCUGGGCaGCa -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 56375 | 0.68 | 0.765464 |
Target: 5'- cCAGGUCACACAgGgGGCGAUCCaGaUCGg -3' miRNA: 3'- -GUUCGGUGUGU-CgCUGCUGGG-C-AGCa -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 48362 | 0.68 | 0.736564 |
Target: 5'- uGAGCCuguGCACgAGCGAgCGcaGCCUGUCGa -3' miRNA: 3'- gUUCGG---UGUG-UCGCU-GC--UGGGCAGCa -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 62882 | 0.69 | 0.726737 |
Target: 5'- gAAGCC-CACGGgGGCGACCgGcacCGUg -3' miRNA: 3'- gUUCGGuGUGUCgCUGCUGGgCa--GCA- -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 62966 | 0.69 | 0.726737 |
Target: 5'- gAAGCC-CACGGgGGCGACCgGcacCGUg -3' miRNA: 3'- gUUCGGuGUGUCgCUGCUGGgCa--GCA- -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 63128 | 0.69 | 0.726737 |
Target: 5'- gAAGCC-CACGGgGGCGACCgGcacCGUg -3' miRNA: 3'- gUUCGGuGUGUCgCUGCUGGgCa--GCA- -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 95961 | 0.72 | 0.544323 |
Target: 5'- aCGAGUCGCACuuuGaCGAUGuCCCGUCGc -3' miRNA: 3'- -GUUCGGUGUGu--C-GCUGCuGGGCAGCa -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 45160 | 0.77 | 0.291605 |
Target: 5'- uGAGCCGCGCGGCcugccgauagugaucGACGGCCCGcaUCGa -3' miRNA: 3'- gUUCGGUGUGUCG---------------CUGCUGGGC--AGCa -5' |
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2990 | 3' | -56.7 | NC_001493.1 | + | 30199 | 0.66 | 0.875388 |
Target: 5'- gCGGGCCGCuuacGCGGCGgaGCGAgCCGUg-- -3' miRNA: 3'- -GUUCGGUG----UGUCGC--UGCUgGGCAgca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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