miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2990 5' -57.9 NC_001493.1 + 45179 0.66 0.844205
Target:  5'- uGCugCGCgcauaucgAGGuGAGcCGCGCGGCcuGCCg -3'
miRNA:   3'- -UGugGUG--------UCC-CUCuGCGCGCUGc-UGG- -5'
2990 5' -57.9 NC_001493.1 + 88425 0.66 0.844205
Target:  5'- gGCGCgACucAGGGAGAuggaggccacCGUGCGgaACGAUCu -3'
miRNA:   3'- -UGUGgUG--UCCCUCU----------GCGCGC--UGCUGG- -5'
2990 5' -57.9 NC_001493.1 + 1539 0.66 0.836177
Target:  5'- --uCCGCgaAGGGGGAgGaCGCGGCGAa- -3'
miRNA:   3'- uguGGUG--UCCCUCUgC-GCGCUGCUgg -5'
2990 5' -57.9 NC_001493.1 + 133795 0.66 0.836177
Target:  5'- cACGCCACcccGGGGAGAaaguccagcaCGuCGC-ACGGCUc -3'
miRNA:   3'- -UGUGGUG---UCCCUCU----------GC-GCGcUGCUGG- -5'
2990 5' -57.9 NC_001493.1 + 18241 0.66 0.836177
Target:  5'- cACGCCACcccGGGGAGAaaguccagcaCGuCGC-ACGGCUc -3'
miRNA:   3'- -UGUGGUG---UCCCUCU----------GC-GCGcUGCUGG- -5'
2990 5' -57.9 NC_001493.1 + 117094 0.66 0.836177
Target:  5'- --uCCGCgaAGGGGGAgGaCGCGGCGAa- -3'
miRNA:   3'- uguGGUG--UCCCUCUgC-GCGCUGCUgg -5'
2990 5' -57.9 NC_001493.1 + 20835 0.66 0.827969
Target:  5'- cCAUCugAG-GAGGCgcgGCGCGGCG-CCg -3'
miRNA:   3'- uGUGGugUCcCUCUG---CGCGCUGCuGG- -5'
2990 5' -57.9 NC_001493.1 + 94974 0.66 0.827969
Target:  5'- cCGCC-CGGGGAucuACGaGCGGCGGCa -3'
miRNA:   3'- uGUGGuGUCCCUc--UGCgCGCUGCUGg -5'
2990 5' -57.9 NC_001493.1 + 45725 0.66 0.827969
Target:  5'- uGCGCUugGGGuaGGGACGCGgGcuugaACGugCu -3'
miRNA:   3'- -UGUGGugUCC--CUCUGCGCgC-----UGCugG- -5'
2990 5' -57.9 NC_001493.1 + 21105 0.66 0.827969
Target:  5'- --uCCACGGGGAuGGCGgCGCucaaGGCCa -3'
miRNA:   3'- uguGGUGUCCCU-CUGC-GCGcug-CUGG- -5'
2990 5' -57.9 NC_001493.1 + 46269 0.66 0.827138
Target:  5'- cCGCgUACGGGGgccugaagucaguGGACGaUGUGAUGGCCa -3'
miRNA:   3'- uGUG-GUGUCCC-------------UCUGC-GCGCUGCUGG- -5'
2990 5' -57.9 NC_001493.1 + 133574 0.66 0.819588
Target:  5'- -gGCCACGGuGGAcauuUGCGCGAccauccucgcCGACCu -3'
miRNA:   3'- ugUGGUGUC-CCUcu--GCGCGCU----------GCUGG- -5'
2990 5' -57.9 NC_001493.1 + 133984 0.66 0.819588
Target:  5'- cCGCCGuuCuGGGaAGAgcCGUGCGACGugCu -3'
miRNA:   3'- uGUGGU--GuCCC-UCU--GCGCGCUGCugG- -5'
2990 5' -57.9 NC_001493.1 + 18430 0.66 0.819588
Target:  5'- cCGCCGuuCuGGGaAGAgcCGUGCGACGugCu -3'
miRNA:   3'- uGUGGU--GuCCC-UCU--GCGCGCUGCugG- -5'
2990 5' -57.9 NC_001493.1 + 9796 0.66 0.819588
Target:  5'- -aACCGCGGGGAcgucgagcucGGCGCG-GGCGcauCCc -3'
miRNA:   3'- ugUGGUGUCCCU----------CUGCGCgCUGCu--GG- -5'
2990 5' -57.9 NC_001493.1 + 125350 0.66 0.819588
Target:  5'- -aACCGCGGGGAcgucgagcucGGCGCG-GGCGcauCCc -3'
miRNA:   3'- ugUGGUGUCCCU----------CUGCGCgCUGCu--GG- -5'
2990 5' -57.9 NC_001493.1 + 18020 0.66 0.819588
Target:  5'- -gGCCACGGuGGAcauuUGCGCGAccauccucgcCGACCu -3'
miRNA:   3'- ugUGGUGUC-CCUcu--GCGCGCU----------GCUGG- -5'
2990 5' -57.9 NC_001493.1 + 84397 0.66 0.811904
Target:  5'- cUACCAUcuGGGGAGACcucaagauuucccCGACGACCa -3'
miRNA:   3'- uGUGGUG--UCCCUCUGcgc----------GCUGCUGG- -5'
2990 5' -57.9 NC_001493.1 + 93829 0.66 0.811042
Target:  5'- -gACC-CGGGGGuaaaucGGCGgGCG-CGACCu -3'
miRNA:   3'- ugUGGuGUCCCU------CUGCgCGCuGCUGG- -5'
2990 5' -57.9 NC_001493.1 + 27604 0.66 0.811042
Target:  5'- gACGCCucgaGGGGAccCGCGCGGgcucgggauCGGCCc -3'
miRNA:   3'- -UGUGGug--UCCCUcuGCGCGCU---------GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.