miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29905 5' -54 NC_006273.1 + 159278 0.66 0.987676
Target:  5'- uGAGUGGCguGGUGcucaUGACGcCGguGCc -3'
miRNA:   3'- uCUUACCG--CCACuc--ACUGCuGCguCG- -5'
29905 5' -54 NC_006273.1 + 145530 0.66 0.987676
Target:  5'- gGGuuUGGaCGGcaaaGGUGACGACGgGGUu -3'
miRNA:   3'- -UCuuACC-GCCac--UCACUGCUGCgUCG- -5'
29905 5' -54 NC_006273.1 + 162357 0.66 0.987676
Target:  5'- -cGGUGGUGGUgGAGgcGGCGGCGCu-- -3'
miRNA:   3'- ucUUACCGCCA-CUCa-CUGCUGCGucg -5'
29905 5' -54 NC_006273.1 + 131536 0.66 0.987676
Target:  5'- uGGAGgaccaGGCGGUGAuccgcuCGgaGCGCAGCa -3'
miRNA:   3'- -UCUUa----CCGCCACUcacu--GC--UGCGUCG- -5'
29905 5' -54 NC_006273.1 + 102644 0.66 0.986124
Target:  5'- ----aGGCGGggaacgGcGUGAUGauGCGCAGCc -3'
miRNA:   3'- ucuuaCCGCCa-----CuCACUGC--UGCGUCG- -5'
29905 5' -54 NC_006273.1 + 1209 0.66 0.98563
Target:  5'- cGGGAUGGCGaGcUGuugcGUGGCGGggacgggggacucuUGCGGCg -3'
miRNA:   3'- -UCUUACCGC-C-ACu---CACUGCU--------------GCGUCG- -5'
29905 5' -54 NC_006273.1 + 41147 0.66 0.98563
Target:  5'- cGGGAUGGCGaGcUGuugcGUGGCGGggacgggggacucuUGCGGCg -3'
miRNA:   3'- -UCUUACCGC-C-ACu---CACUGCU--------------GCGUCG- -5'
29905 5' -54 NC_006273.1 + 151971 0.66 0.985123
Target:  5'- cGGAUGucccgcucgggcgccGcCGGgccGGGUGGCGGCgGCAGCa -3'
miRNA:   3'- uCUUAC---------------C-GCCa--CUCACUGCUG-CGUCG- -5'
29905 5' -54 NC_006273.1 + 160590 0.66 0.984426
Target:  5'- gAGGggGGaGGUG-GUGACGACGaggaCGGUg -3'
miRNA:   3'- -UCUuaCCgCCACuCACUGCUGC----GUCG- -5'
29905 5' -54 NC_006273.1 + 192610 0.66 0.984426
Target:  5'- gAGAcucGGCGGUGcAGaaUGcgacucGCGGCGUAGCu -3'
miRNA:   3'- -UCUua-CCGCCAC-UC--AC------UGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 139854 0.66 0.982574
Target:  5'- uGGAAcGGaUGGUcGAGcUGuCGGCGCAGUc -3'
miRNA:   3'- -UCUUaCC-GCCA-CUC-ACuGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 2212 0.66 0.982574
Target:  5'- --cAUGGCGcUGGGc-ACGACGCGGUg -3'
miRNA:   3'- ucuUACCGCcACUCacUGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 211464 0.66 0.982574
Target:  5'- ----aGGCGcGUGGugucaaagaccGUGACGAC-CAGCa -3'
miRNA:   3'- ucuuaCCGC-CACU-----------CACUGCUGcGUCG- -5'
29905 5' -54 NC_006273.1 + 161679 0.66 0.982574
Target:  5'- gGGGucGUGGCGGcugugucguugUGAGgccuguauggGACGAUGCGGa -3'
miRNA:   3'- -UCU--UACCGCC-----------ACUCa---------CUGCUGCGUCg -5'
29905 5' -54 NC_006273.1 + 106929 0.66 0.982574
Target:  5'- --cGUGGCGGUG-GUG-UGAUGgAGUg -3'
miRNA:   3'- ucuUACCGCCACuCACuGCUGCgUCG- -5'
29905 5' -54 NC_006273.1 + 157347 0.66 0.980562
Target:  5'- gAGAcUGGUGGUGAGaguaGugGugG-GGCu -3'
miRNA:   3'- -UCUuACCGCCACUCa---CugCugCgUCG- -5'
29905 5' -54 NC_006273.1 + 161776 0.66 0.980562
Target:  5'- ---cUGGCGG-GAGaagggaaGGCGGCaGCGGCa -3'
miRNA:   3'- ucuuACCGCCaCUCa------CUGCUG-CGUCG- -5'
29905 5' -54 NC_006273.1 + 74207 0.66 0.979925
Target:  5'- uGAcgGGCGcUcgcacaaaacagcaGAGggaGACGGCGCAGCc -3'
miRNA:   3'- uCUuaCCGCcA--------------CUCa--CUGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 155587 0.67 0.978381
Target:  5'- ----cGGCaGU-AGUGGCGGCGuCGGCg -3'
miRNA:   3'- ucuuaCCGcCAcUCACUGCUGC-GUCG- -5'
29905 5' -54 NC_006273.1 + 179278 0.67 0.978381
Target:  5'- ----aGGUaGUGGGUcugacuGCGACGCAGCg -3'
miRNA:   3'- ucuuaCCGcCACUCAc-----UGCUGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.