Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29905 | 5' | -54 | NC_006273.1 | + | 2212 | 0.66 | 0.982574 |
Target: 5'- --cAUGGCGcUGGGc-ACGACGCGGUg -3' miRNA: 3'- ucuUACCGCcACUCacUGCUGCGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 162357 | 0.66 | 0.987676 |
Target: 5'- -cGGUGGUGGUgGAGgcGGCGGCGCu-- -3' miRNA: 3'- ucUUACCGCCA-CUCa-CUGCUGCGucg -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 106929 | 0.66 | 0.982574 |
Target: 5'- --cGUGGCGGUG-GUG-UGAUGgAGUg -3' miRNA: 3'- ucuUACCGCCACuCACuGCUGCgUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 161776 | 0.66 | 0.980562 |
Target: 5'- ---cUGGCGG-GAGaagggaaGGCGGCaGCGGCa -3' miRNA: 3'- ucuuACCGCCaCUCa------CUGCUG-CGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 74207 | 0.66 | 0.979925 |
Target: 5'- uGAcgGGCGcUcgcacaaaacagcaGAGggaGACGGCGCAGCc -3' miRNA: 3'- uCUuaCCGCcA--------------CUCa--CUGCUGCGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 161679 | 0.66 | 0.982574 |
Target: 5'- gGGGucGUGGCGGcugugucguugUGAGgccuguauggGACGAUGCGGa -3' miRNA: 3'- -UCU--UACCGCC-----------ACUCa---------CUGCUGCGUCg -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 139854 | 0.66 | 0.982574 |
Target: 5'- uGGAAcGGaUGGUcGAGcUGuCGGCGCAGUc -3' miRNA: 3'- -UCUUaCC-GCCA-CUC-ACuGCUGCGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 41147 | 0.66 | 0.98563 |
Target: 5'- cGGGAUGGCGaGcUGuugcGUGGCGGggacgggggacucuUGCGGCg -3' miRNA: 3'- -UCUUACCGC-C-ACu---CACUGCU--------------GCGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 102644 | 0.66 | 0.986124 |
Target: 5'- ----aGGCGGggaacgGcGUGAUGauGCGCAGCc -3' miRNA: 3'- ucuuaCCGCCa-----CuCACUGC--UGCGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 157347 | 0.66 | 0.980562 |
Target: 5'- gAGAcUGGUGGUGAGaguaGugGugG-GGCu -3' miRNA: 3'- -UCUuACCGCCACUCa---CugCugCgUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 145530 | 0.66 | 0.987676 |
Target: 5'- gGGuuUGGaCGGcaaaGGUGACGACGgGGUu -3' miRNA: 3'- -UCuuACC-GCCac--UCACUGCUGCgUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 160590 | 0.66 | 0.984426 |
Target: 5'- gAGGggGGaGGUG-GUGACGACGaggaCGGUg -3' miRNA: 3'- -UCUuaCCgCCACuCACUGCUGC----GUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 192610 | 0.66 | 0.984426 |
Target: 5'- gAGAcucGGCGGUGcAGaaUGcgacucGCGGCGUAGCu -3' miRNA: 3'- -UCUua-CCGCCAC-UC--AC------UGCUGCGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 131536 | 0.66 | 0.987676 |
Target: 5'- uGGAGgaccaGGCGGUGAuccgcuCGgaGCGCAGCa -3' miRNA: 3'- -UCUUa----CCGCCACUcacu--GC--UGCGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 151971 | 0.66 | 0.985123 |
Target: 5'- cGGAUGucccgcucgggcgccGcCGGgccGGGUGGCGGCgGCAGCa -3' miRNA: 3'- uCUUAC---------------C-GCCa--CUCACUGCUG-CGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 159278 | 0.66 | 0.987676 |
Target: 5'- uGAGUGGCguGGUGcucaUGACGcCGguGCc -3' miRNA: 3'- uCUUACCG--CCACuc--ACUGCuGCguCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 1209 | 0.66 | 0.98563 |
Target: 5'- cGGGAUGGCGaGcUGuugcGUGGCGGggacgggggacucuUGCGGCg -3' miRNA: 3'- -UCUUACCGC-C-ACu---CACUGCU--------------GCGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 211464 | 0.66 | 0.982574 |
Target: 5'- ----aGGCGcGUGGugucaaagaccGUGACGAC-CAGCa -3' miRNA: 3'- ucuuaCCGC-CACU-----------CACUGCUGcGUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 55050 | 0.67 | 0.96783 |
Target: 5'- cGGcGUGGgcuccauguCGGUGgcAGUGACGGCGaCGGUg -3' miRNA: 3'- -UCuUACC---------GCCAC--UCACUGCUGC-GUCG- -5' |
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29905 | 5' | -54 | NC_006273.1 | + | 112208 | 0.67 | 0.964704 |
Target: 5'- ----cGGCGGUugcugGAgGACGCGGCg -3' miRNA: 3'- ucuuaCCGCCAcuca-CUgCUGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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