miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29905 5' -54 NC_006273.1 + 85857 1.11 0.005531
Target:  5'- uAGAAUGGCGGUGAGUGACGACGCAGCc -3'
miRNA:   3'- -UCUUACCGCCACUCACUGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 162770 0.82 0.305555
Target:  5'- ---cUGGCGGUGguGGUGGCGGCgGCAGCg -3'
miRNA:   3'- ucuuACCGCCAC--UCACUGCUG-CGUCG- -5'
29905 5' -54 NC_006273.1 + 185308 0.8 0.405708
Target:  5'- cGGcGUGGUGGUGAccaccGUG-CGACGCAGCu -3'
miRNA:   3'- -UCuUACCGCCACU-----CACuGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 51563 0.8 0.423718
Target:  5'- gGGggUGGUGGcggcggaggacggagGGGUGGCGGCgGCAGCg -3'
miRNA:   3'- -UCuuACCGCCa--------------CUCACUGCUG-CGUCG- -5'
29905 5' -54 NC_006273.1 + 71744 0.77 0.53385
Target:  5'- ----cGGCGGUGguGGUGGCGGCgGCAGUg -3'
miRNA:   3'- ucuuaCCGCCAC--UCACUGCUG-CGUCG- -5'
29905 5' -54 NC_006273.1 + 94851 0.76 0.633374
Target:  5'- uGGAcGGUGGUGGGgacgGGCGACGCcccGGCu -3'
miRNA:   3'- uCUUaCCGCCACUCa---CUGCUGCG---UCG- -5'
29905 5' -54 NC_006273.1 + 177110 0.75 0.643437
Target:  5'- ---cUGGCGGUGGGUcccGACGACGagguGGCg -3'
miRNA:   3'- ucuuACCGCCACUCA---CUGCUGCg---UCG- -5'
29905 5' -54 NC_006273.1 + 54928 0.75 0.663529
Target:  5'- cGAuagGGCGGUGGGcugcagucggGugGugGCGGCg -3'
miRNA:   3'- uCUua-CCGCCACUCa---------CugCugCGUCG- -5'
29905 5' -54 NC_006273.1 + 140697 0.75 0.663529
Target:  5'- cGggUGGUGGUGguGGUgguggaGugGugGCGGCg -3'
miRNA:   3'- uCuuACCGCCAC--UCA------CugCugCGUCG- -5'
29905 5' -54 NC_006273.1 + 80384 0.75 0.673541
Target:  5'- gGGAGcGGCGGcc-GUGGCGGCgGCAGCg -3'
miRNA:   3'- -UCUUaCCGCCacuCACUGCUG-CGUCG- -5'
29905 5' -54 NC_006273.1 + 1154 0.75 0.680532
Target:  5'- gGGGAcGGUGGUGAG-GACGGggacaggggcauuuCGCGGCg -3'
miRNA:   3'- -UCUUaCCGCCACUCaCUGCU--------------GCGUCG- -5'
29905 5' -54 NC_006273.1 + 41092 0.75 0.680532
Target:  5'- gGGGAcGGUGGUGAG-GACGGggacaggggcauuuCGCGGCg -3'
miRNA:   3'- -UCUUaCCGCCACUCaCUGCU--------------GCGUCG- -5'
29905 5' -54 NC_006273.1 + 207309 0.74 0.703351
Target:  5'- cGGAUcGGCGGUG-GUGACG--GCGGCg -3'
miRNA:   3'- uCUUA-CCGCCACuCACUGCugCGUCG- -5'
29905 5' -54 NC_006273.1 + 72799 0.74 0.713183
Target:  5'- ----gGGCGGguaGAGccgcaGACGGCGCAGCa -3'
miRNA:   3'- ucuuaCCGCCa--CUCa----CUGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 145642 0.74 0.732638
Target:  5'- gGGggUGGCGGggauuccgGGGgaaUGAUggGGCGCGGCg -3'
miRNA:   3'- -UCuuACCGCCa-------CUC---ACUG--CUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 100883 0.73 0.788699
Target:  5'- uAGAcgGGCgagguagaacucGGUGAGguacccGACGAgGCGGCg -3'
miRNA:   3'- -UCUuaCCG------------CCACUCa-----CUGCUgCGUCG- -5'
29905 5' -54 NC_006273.1 + 46959 0.72 0.797616
Target:  5'- gGGuGUGGUGGcUGAGUGACG-C-CGGCg -3'
miRNA:   3'- -UCuUACCGCC-ACUCACUGCuGcGUCG- -5'
29905 5' -54 NC_006273.1 + 29810 0.72 0.797616
Target:  5'- --uGUGGUGGcUGGGaGugGugGCGGCa -3'
miRNA:   3'- ucuUACCGCC-ACUCaCugCugCGUCG- -5'
29905 5' -54 NC_006273.1 + 70683 0.72 0.806388
Target:  5'- ----cGGCGGUgGAG-GGCG-CGCGGCa -3'
miRNA:   3'- ucuuaCCGCCA-CUCaCUGCuGCGUCG- -5'
29905 5' -54 NC_006273.1 + 153602 0.72 0.806388
Target:  5'- uGAccGGCGGUGcggucgcgGGUGGcCGGCGuCAGCg -3'
miRNA:   3'- uCUuaCCGCCAC--------UCACU-GCUGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.