miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29905 5' -54 NC_006273.1 + 179278 0.67 0.978381
Target:  5'- ----aGGUaGUGGGUcugacuGCGACGCAGCg -3'
miRNA:   3'- ucuuaCCGcCACUCAc-----UGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 104335 0.67 0.978381
Target:  5'- cGAGaGGgGGaUGGGcUGGCG-CGCGGCc -3'
miRNA:   3'- uCUUaCCgCC-ACUC-ACUGCuGCGUCG- -5'
29905 5' -54 NC_006273.1 + 94807 0.67 0.978381
Target:  5'- uGGggUcgcGGCGGUcGGccGACGACGaCGGUa -3'
miRNA:   3'- -UCuuA---CCGCCAcUCa-CUGCUGC-GUCG- -5'
29905 5' -54 NC_006273.1 + 8006 0.67 0.976024
Target:  5'- ----aGGUGGUGcgacugacGGUGGCGGCgGCAGa -3'
miRNA:   3'- ucuuaCCGCCAC--------UCACUGCUG-CGUCg -5'
29905 5' -54 NC_006273.1 + 208541 0.67 0.976024
Target:  5'- cGGAugauGUGGCucacGGgcauuuuGGUGGCGAUGUAGCg -3'
miRNA:   3'- -UCU----UACCG----CCac-----UCACUGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 34987 0.67 0.976024
Target:  5'- aAGAagGUGGCGGcGAa--GCGACGCGGa -3'
miRNA:   3'- -UCU--UACCGCCaCUcacUGCUGCGUCg -5'
29905 5' -54 NC_006273.1 + 44498 0.67 0.97187
Target:  5'- cGAGcGGCGGUGAgacacacgcgcgcacGUcGGCGGCGaUAGCc -3'
miRNA:   3'- uCUUaCCGCCACU---------------CA-CUGCUGC-GUCG- -5'
29905 5' -54 NC_006273.1 + 99504 0.67 0.970755
Target:  5'- ----cGGUaccGGUG-GUGGCGGCgGCGGCu -3'
miRNA:   3'- ucuuaCCG---CCACuCACUGCUG-CGUCG- -5'
29905 5' -54 NC_006273.1 + 196660 0.67 0.970755
Target:  5'- ----aGGCcgaacGGUGAaucuuggcGUGGCGcACGCAGCg -3'
miRNA:   3'- ucuuaCCG-----CCACU--------CACUGC-UGCGUCG- -5'
29905 5' -54 NC_006273.1 + 63993 0.67 0.969899
Target:  5'- cAGcAGUGGCGGagGAgcauccGUGACcucgagccaccaugGGCGCGGCg -3'
miRNA:   3'- -UC-UUACCGCCa-CU------CACUG--------------CUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 55050 0.67 0.96783
Target:  5'- cGGcGUGGgcuccauguCGGUGgcAGUGACGGCGaCGGUg -3'
miRNA:   3'- -UCuUACC---------GCCAC--UCACUGCUGC-GUCG- -5'
29905 5' -54 NC_006273.1 + 178831 0.67 0.96783
Target:  5'- ----cGGCGGcgGAG-GAgGAgGCGGCg -3'
miRNA:   3'- ucuuaCCGCCa-CUCaCUgCUgCGUCG- -5'
29905 5' -54 NC_006273.1 + 13993 0.67 0.96783
Target:  5'- gAGAGUauaaacuggGGCGGgcgcgGGGUGGCGGaGCGGg -3'
miRNA:   3'- -UCUUA---------CCGCCa----CUCACUGCUgCGUCg -5'
29905 5' -54 NC_006273.1 + 102087 0.67 0.964704
Target:  5'- ----cGGCGGccacacgcGGGUGACGACG-AGCc -3'
miRNA:   3'- ucuuaCCGCCa-------CUCACUGCUGCgUCG- -5'
29905 5' -54 NC_006273.1 + 112208 0.67 0.964704
Target:  5'- ----cGGCGGUugcugGAgGACGCGGCg -3'
miRNA:   3'- ucuuaCCGCCAcuca-CUgCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 139567 0.67 0.963726
Target:  5'- ----cGGCGGUG-GUGcgagcggagguuagGCGGCaGCGGCg -3'
miRNA:   3'- ucuuaCCGCCACuCAC--------------UGCUG-CGUCG- -5'
29905 5' -54 NC_006273.1 + 212051 0.68 0.961371
Target:  5'- gAGggUcGCGG-GGGUGGgGGCGCccaGGCc -3'
miRNA:   3'- -UCuuAcCGCCaCUCACUgCUGCG---UCG- -5'
29905 5' -54 NC_006273.1 + 179205 0.68 0.961371
Target:  5'- cGGAUGGUGGauaauagcgcGGUGACGuACGCcGCg -3'
miRNA:   3'- uCUUACCGCCac--------UCACUGC-UGCGuCG- -5'
29905 5' -54 NC_006273.1 + 193985 0.68 0.961371
Target:  5'- -aGAUGGCGGUGuccacuuGUGcuUGuCGCGGCa -3'
miRNA:   3'- ucUUACCGCCACu------CACu-GCuGCGUCG- -5'
29905 5' -54 NC_006273.1 + 119605 0.68 0.957825
Target:  5'- cGggU-GCGGUGAGUcgUGAUGCAGa -3'
miRNA:   3'- uCuuAcCGCCACUCAcuGCUGCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.