miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29905 5' -54 NC_006273.1 + 19 0.68 0.950081
Target:  5'- ----cGGCGGUcgGGGUGugucgGgGGCGCGGCg -3'
miRNA:   3'- ucuuaCCGCCA--CUCAC-----UgCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 66 0.68 0.954063
Target:  5'- uGGAGUuGCGuGUGuG-GACGGCGaCGGCg -3'
miRNA:   3'- -UCUUAcCGC-CACuCaCUGCUGC-GUCG- -5'
29905 5' -54 NC_006273.1 + 103 0.68 0.954063
Target:  5'- cGuGUGcuGCGGUGGGU-ACGGCGaCGGCg -3'
miRNA:   3'- uCuUAC--CGCCACUCAcUGCUGC-GUCG- -5'
29905 5' -54 NC_006273.1 + 1077 0.68 0.945875
Target:  5'- gGGAcgGGgGGUGuGcGGgGACGgGGCg -3'
miRNA:   3'- -UCUuaCCgCCACuCaCUgCUGCgUCG- -5'
29905 5' -54 NC_006273.1 + 1154 0.75 0.680532
Target:  5'- gGGGAcGGUGGUGAG-GACGGggacaggggcauuuCGCGGCg -3'
miRNA:   3'- -UCUUaCCGCCACUCaCUGCU--------------GCGUCG- -5'
29905 5' -54 NC_006273.1 + 1209 0.66 0.98563
Target:  5'- cGGGAUGGCGaGcUGuugcGUGGCGGggacgggggacucuUGCGGCg -3'
miRNA:   3'- -UCUUACCGC-C-ACu---CACUGCU--------------GCGUCG- -5'
29905 5' -54 NC_006273.1 + 1745 0.68 0.957825
Target:  5'- ----cGGCGGUGGGccgGcACGACGguGg -3'
miRNA:   3'- ucuuaCCGCCACUCa--C-UGCUGCguCg -5'
29905 5' -54 NC_006273.1 + 2212 0.66 0.982574
Target:  5'- --cAUGGCGcUGGGc-ACGACGCGGUg -3'
miRNA:   3'- ucuUACCGCcACUCacUGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 7932 0.7 0.91002
Target:  5'- cGGAAacGGCGGU-AGUGACcagguggucaGugGCGGCg -3'
miRNA:   3'- -UCUUa-CCGCCAcUCACUG----------CugCGUCG- -5'
29905 5' -54 NC_006273.1 + 8006 0.67 0.976024
Target:  5'- ----aGGUGGUGcgacugacGGUGGCGGCgGCAGa -3'
miRNA:   3'- ucuuaCCGCCAC--------UCACUGCUG-CGUCg -5'
29905 5' -54 NC_006273.1 + 13993 0.67 0.96783
Target:  5'- gAGAGUauaaacuggGGCGGgcgcgGGGUGGCGGaGCGGg -3'
miRNA:   3'- -UCUUA---------CCGCCa----CUCACUGCUgCGUCg -5'
29905 5' -54 NC_006273.1 + 20932 0.68 0.949671
Target:  5'- gGGGcUGGCguuucuaGGUGGccGUGACGACGUcGCu -3'
miRNA:   3'- -UCUuACCG-------CCACU--CACUGCUGCGuCG- -5'
29905 5' -54 NC_006273.1 + 21475 0.69 0.941443
Target:  5'- ---cUGGUGGUG---GACGcACGCAGCg -3'
miRNA:   3'- ucuuACCGCCACucaCUGC-UGCGUCG- -5'
29905 5' -54 NC_006273.1 + 21534 0.69 0.919211
Target:  5'- ----cGGCGGgcgcuggcguuucGAGgacGGCGGCGCGGCg -3'
miRNA:   3'- ucuuaCCGCCa------------CUCa--CUGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 26801 0.7 0.903978
Target:  5'- gGGAaucAUGG-GGUGGGgacgGGgGACGCGGUa -3'
miRNA:   3'- -UCU---UACCgCCACUCa---CUgCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 29117 0.68 0.945442
Target:  5'- aAGggUGGCGGagggccagaaGAGgcggccuUGACGGCguugGCAGCg -3'
miRNA:   3'- -UCuuACCGCCa---------CUC-------ACUGCUG----CGUCG- -5'
29905 5' -54 NC_006273.1 + 29810 0.72 0.797616
Target:  5'- --uGUGGUGGcUGGGaGugGugGCGGCa -3'
miRNA:   3'- ucuUACCGCC-ACUCaCugCugCGUCG- -5'
29905 5' -54 NC_006273.1 + 30776 0.69 0.921417
Target:  5'- ----cGGCGGUG-GcGACGAUaacaGCAGCa -3'
miRNA:   3'- ucuuaCCGCCACuCaCUGCUG----CGUCG- -5'
29905 5' -54 NC_006273.1 + 34987 0.67 0.976024
Target:  5'- aAGAagGUGGCGGcGAa--GCGACGCGGa -3'
miRNA:   3'- -UCU--UACCGCCaCUcacUGCUGCGUCg -5'
29905 5' -54 NC_006273.1 + 40004 0.68 0.954063
Target:  5'- uGGAGUuGCGuGUGuG-GACGGCGaCGGCg -3'
miRNA:   3'- -UCUUAcCGC-CACuCaCUGCUGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.