miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29905 5' -54 NC_006273.1 + 21534 0.69 0.919211
Target:  5'- ----cGGCGGgcgcuggcguuucGAGgacGGCGGCGCGGCg -3'
miRNA:   3'- ucuuaCCGCCa------------CUCa--CUGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 162195 0.71 0.863094
Target:  5'- cGGA-GGCGGUG-GUuGCGGCGCcGCg -3'
miRNA:   3'- uCUUaCCGCCACuCAcUGCUGCGuCG- -5'
29905 5' -54 NC_006273.1 + 95241 0.71 0.87044
Target:  5'- cAGGcuGUGGCGuGUGuGcUGGcCGAUGCGGCg -3'
miRNA:   3'- -UCU--UACCGC-CACuC-ACU-GCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 115568 0.7 0.882451
Target:  5'- cGGggUGGUGGUGcugcugcuguugugGGUG-CGgACGguGCg -3'
miRNA:   3'- -UCuuACCGCCAC--------------UCACuGC-UGCguCG- -5'
29905 5' -54 NC_006273.1 + 149477 0.7 0.884507
Target:  5'- ----gGGUGGUGGGUGGuuuCGCGGCg -3'
miRNA:   3'- ucuuaCCGCCACUCACUgcuGCGUCG- -5'
29905 5' -54 NC_006273.1 + 189114 0.7 0.891218
Target:  5'- cAGGAUGGCGGcggcUGAugcaguaccGUGuCGACGCuGGCc -3'
miRNA:   3'- -UCUUACCGCC----ACU---------CACuGCUGCG-UCG- -5'
29905 5' -54 NC_006273.1 + 26801 0.7 0.903978
Target:  5'- gGGAaucAUGG-GGUGGGgacgGGgGACGCGGUa -3'
miRNA:   3'- -UCU---UACCgCCACUCa---CUgCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 149559 0.7 0.903978
Target:  5'- ----cGGCGGUGguAGUGgcguggGCGACGCGGa -3'
miRNA:   3'- ucuuaCCGCCAC--UCAC------UGCUGCGUCg -5'
29905 5' -54 NC_006273.1 + 167267 0.7 0.915834
Target:  5'- uGAccGUGGCGGUGGcgggcaUGACGGgguuUGCGGCg -3'
miRNA:   3'- uCU--UACCGCCACUc-----ACUGCU----GCGUCG- -5'
29905 5' -54 NC_006273.1 + 166414 0.71 0.847803
Target:  5'- aGGAaaccGUGGUGG-GAGUGGUGACGguGUu -3'
miRNA:   3'- -UCU----UACCGCCaCUCACUGCUGCguCG- -5'
29905 5' -54 NC_006273.1 + 162384 0.72 0.839871
Target:  5'- -uGGUGGCGGUG-GcGGCGGCgggaGCGGCg -3'
miRNA:   3'- ucUUACCGCCACuCaCUGCUG----CGUCG- -5'
29905 5' -54 NC_006273.1 + 100883 0.73 0.788699
Target:  5'- uAGAcgGGCgagguagaacucGGUGAGguacccGACGAgGCGGCg -3'
miRNA:   3'- -UCUuaCCG------------CCACUCa-----CUGCUgCGUCG- -5'
29905 5' -54 NC_006273.1 + 185308 0.8 0.405708
Target:  5'- cGGcGUGGUGGUGAccaccGUG-CGACGCAGCu -3'
miRNA:   3'- -UCuUACCGCCACU-----CACuGCUGCGUCG- -5'
29905 5' -54 NC_006273.1 + 51563 0.8 0.423718
Target:  5'- gGGggUGGUGGcggcggaggacggagGGGUGGCGGCgGCAGCg -3'
miRNA:   3'- -UCuuACCGCCa--------------CUCACUGCUG-CGUCG- -5'
29905 5' -54 NC_006273.1 + 94851 0.76 0.633374
Target:  5'- uGGAcGGUGGUGGGgacgGGCGACGCcccGGCu -3'
miRNA:   3'- uCUUaCCGCCACUCa---CUGCUGCG---UCG- -5'
29905 5' -54 NC_006273.1 + 54928 0.75 0.663529
Target:  5'- cGAuagGGCGGUGGGcugcagucggGugGugGCGGCg -3'
miRNA:   3'- uCUua-CCGCCACUCa---------CugCugCGUCG- -5'
29905 5' -54 NC_006273.1 + 140697 0.75 0.663529
Target:  5'- cGggUGGUGGUGguGGUgguggaGugGugGCGGCg -3'
miRNA:   3'- uCuuACCGCCAC--UCA------CugCugCGUCG- -5'
29905 5' -54 NC_006273.1 + 1154 0.75 0.680532
Target:  5'- gGGGAcGGUGGUGAG-GACGGggacaggggcauuuCGCGGCg -3'
miRNA:   3'- -UCUUaCCGCCACUCaCUGCU--------------GCGUCG- -5'
29905 5' -54 NC_006273.1 + 207309 0.74 0.703351
Target:  5'- cGGAUcGGCGGUG-GUGACG--GCGGCg -3'
miRNA:   3'- uCUUA-CCGCCACuCACUGCugCGUCG- -5'
29905 5' -54 NC_006273.1 + 72799 0.74 0.713183
Target:  5'- ----gGGCGGguaGAGccgcaGACGGCGCAGCa -3'
miRNA:   3'- ucuuaCCGCCa--CUCa----CUGCUGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.