Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2991 | 5' | -62.8 | NC_001493.1 | + | 8317 | 0.69 | 0.395698 |
Target: 5'- -cUCCGUGG-CGc-GCCGUGCCCGCUu -3' miRNA: 3'- gaGGGCACUaGCcuCGGCGCGGGCGA- -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 10588 | 0.67 | 0.528638 |
Target: 5'- gUCUCG-GAcCGGGGCUGUGCCCa-- -3' miRNA: 3'- gAGGGCaCUaGCCUCGGCGCGGGcga -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 10665 | 0.67 | 0.528638 |
Target: 5'- gUCUCG-GAcCGGGGCUGUGCCCa-- -3' miRNA: 3'- gAGGGCaCUaGCCUCGGCGCGGGcga -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 12425 | 0.69 | 0.429089 |
Target: 5'- -cCCCGaccucacauUGAUaUGGA-CCGCGCCCGCg -3' miRNA: 3'- gaGGGC---------ACUA-GCCUcGGCGCGGGCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 13109 | 0.68 | 0.437693 |
Target: 5'- aUCUCGg---CGGcGGCCaGCGCCCGCg -3' miRNA: 3'- gAGGGCacuaGCC-UCGG-CGCGGGCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 17768 | 0.76 | 0.147494 |
Target: 5'- aUCCCGgGGUCGGGGCCGCaacgcgggcguGCCCGg- -3' miRNA: 3'- gAGGGCaCUAGCCUCGGCG-----------CGGGCga -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 17984 | 0.67 | 0.491281 |
Target: 5'- cCUCCCacucGAucaguuUCGGGGCCGCGUCCa-- -3' miRNA: 3'- -GAGGGca--CU------AGCCUCGGCGCGGGcga -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 18862 | 0.71 | 0.334162 |
Target: 5'- cCUCCCG-GAgagugaGGGGUCGUGCCCGa- -3' miRNA: 3'- -GAGGGCaCUag----CCUCGGCGCGGGCga -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 19891 | 0.67 | 0.519194 |
Target: 5'- gUCCCcc-GUCGGgAGUCGCGCCgGCc -3' miRNA: 3'- gAGGGcacUAGCC-UCGGCGCGGgCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 21006 | 0.67 | 0.509817 |
Target: 5'- -gCCUacaaGAUCGGcGCCGCGCCgCGCc -3' miRNA: 3'- gaGGGca--CUAGCCuCGGCGCGG-GCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 27794 | 0.74 | 0.202188 |
Target: 5'- gUCCCGgccggugGuAUCGGGGCCGaucccgaGCCCGCg -3' miRNA: 3'- gAGGGCa------C-UAGCCUCGGCg------CGGGCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 38013 | 0.66 | 0.586448 |
Target: 5'- ---gCGaUGAUCGGGGCCGUGUaCGCg -3' miRNA: 3'- gaggGC-ACUAGCCUCGGCGCGgGCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 62430 | 0.75 | 0.179321 |
Target: 5'- -gCCCGUGGcCGuGGCCGUGCCCGUg -3' miRNA: 3'- gaGGGCACUaGCcUCGGCGCGGGCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 64602 | 0.66 | 0.606023 |
Target: 5'- gCUgUUGUGcugacGAGCCGCGCCCGUg -3' miRNA: 3'- -GAgGGCACuagc-CUCGGCGCGGGCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 68384 | 0.69 | 0.419741 |
Target: 5'- gCUCCCGUaacugucGAgUgGGAGCCGUGUUCGUUa -3' miRNA: 3'- -GAGGGCA-------CU-AgCCUCGGCGCGGGCGA- -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 85545 | 0.7 | 0.379644 |
Target: 5'- -cUCgGUGAUUGGAaggGCCGUGCCgCGCa -3' miRNA: 3'- gaGGgCACUAGCCU---CGGCGCGG-GCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 91781 | 0.66 | 0.586448 |
Target: 5'- -cCCCGUucccaGA-CGGAgGgUGCGCCCGCg -3' miRNA: 3'- gaGGGCA-----CUaGCCU-CgGCGCGGGCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 96251 | 0.68 | 0.446395 |
Target: 5'- -aUCgGaUGaAUCGGGGCCguaGCGCCCGCg -3' miRNA: 3'- gaGGgC-AC-UAGCCUCGG---CGCGGGCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 102300 | 0.67 | 0.500511 |
Target: 5'- gCUCCCccucgGUGcUCaGGGCCGCcuguGCCCGCc -3' miRNA: 3'- -GAGGG-----CACuAGcCUCGGCG----CGGGCGa -5' |
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2991 | 5' | -62.8 | NC_001493.1 | + | 108938 | 1.07 | 0.000846 |
Target: 5'- cCUCCCGUGAUCGGAGCCGCGCCCGCUg -3' miRNA: 3'- -GAGGGCACUAGCCUCGGCGCGGGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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