Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2991 | 5' | -62.8 | NC_001493.1 | + | 85545 | 0.7 | 0.379644 |
|
Target: 5'- -cUCgGUGAUUGGAaggGCCGUGCCgCGCa -3' miRNA: 3'- gaGGgCACUAGCCU---CGGCGCGG-GCGa -5' |
|||||||
| 2991 | 5' | -62.8 | NC_001493.1 | + | 131513 | 0.7 | 0.379644 |
|
Target: 5'- -aCCCG-GAUUGGAGCCcgGUGCCCuGUa -3' miRNA: 3'- gaGGGCaCUAGCCUCGG--CGCGGG-CGa -5' |
|||||||
| 2991 | 5' | -62.8 | NC_001493.1 | + | 18862 | 0.71 | 0.334162 |
|
Target: 5'- cCUCCCG-GAgagugaGGGGUCGUGCCCGa- -3' miRNA: 3'- -GAGGGCaCUag----CCUCGGCGCGGGCga -5' |
|||||||
| 2991 | 5' | -62.8 | NC_001493.1 | + | 27794 | 0.74 | 0.202188 |
|
Target: 5'- gUCCCGgccggugGuAUCGGGGCCGaucccgaGCCCGCg -3' miRNA: 3'- gAGGGCa------C-UAGCCUCGGCg------CGGGCGa -5' |
|||||||
| 2991 | 5' | -62.8 | NC_001493.1 | + | 62430 | 0.75 | 0.179321 |
|
Target: 5'- -gCCCGUGGcCGuGGCCGUGCCCGUg -3' miRNA: 3'- gaGGGCACUaGCcUCGGCGCGGGCGa -5' |
|||||||
| 2991 | 5' | -62.8 | NC_001493.1 | + | 133322 | 0.76 | 0.147494 |
|
Target: 5'- aUCCCGgGGUCGGGGCCGCaacgcgggcguGCCCGg- -3' miRNA: 3'- gAGGGCaCUAGCCUCGGCG-----------CGGGCga -5' |
|||||||
| 2991 | 5' | -62.8 | NC_001493.1 | + | 17768 | 0.76 | 0.147494 |
|
Target: 5'- aUCCCGgGGUCGGGGCCGCaacgcgggcguGCCCGg- -3' miRNA: 3'- gAGGGCaCUAGCCUCGGCG-----------CGGGCga -5' |
|||||||
| 2991 | 5' | -62.8 | NC_001493.1 | + | 108938 | 1.07 | 0.000846 |
|
Target: 5'- cCUCCCGUGAUCGGAGCCGCGCCCGCUg -3' miRNA: 3'- -GAGGGCACUAGCCUCGGCGCGGGCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home