miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29910 3' -56.1 NC_006273.1 + 225151 0.66 0.95876
Target:  5'- --gUCUCUCGgUGcGUGGACCAGAcggcguccaugcACCg -3'
miRNA:   3'- cugGGGGAGCgAC-CACCUGGUUU------------UGG- -5'
29910 3' -56.1 NC_006273.1 + 112782 0.66 0.95876
Target:  5'- cGCUUCCaucgCGCUGGaGGACCugcuGCCc -3'
miRNA:   3'- cUGGGGGa---GCGACCaCCUGGuuu-UGG- -5'
29910 3' -56.1 NC_006273.1 + 183244 0.66 0.95876
Target:  5'- uGCCCCC-CGU---UGGACCAGGAgCu -3'
miRNA:   3'- cUGGGGGaGCGaccACCUGGUUUUgG- -5'
29910 3' -56.1 NC_006273.1 + 150768 0.66 0.955109
Target:  5'- aGCCgCCgggCGCU-GUGGugCAGcAGCCg -3'
miRNA:   3'- cUGGgGGa--GCGAcCACCugGUU-UUGG- -5'
29910 3' -56.1 NC_006273.1 + 204933 0.66 0.955109
Target:  5'- aGCCCCgaCGUgguuGUGGucACCGAAACCc -3'
miRNA:   3'- cUGGGGgaGCGac--CACC--UGGUUUUGG- -5'
29910 3' -56.1 NC_006273.1 + 105029 0.66 0.955109
Target:  5'- gGAUCaggCCUCGCUGGUggaGGugCAGcgcguuaugGGCCu -3'
miRNA:   3'- -CUGGg--GGAGCGACCA---CCugGUU---------UUGG- -5'
29910 3' -56.1 NC_006273.1 + 91006 0.66 0.947163
Target:  5'- uGACgaaggCCUCGUagaacuUGGUGG-CCGAGACCg -3'
miRNA:   3'- -CUGgg---GGAGCG------ACCACCuGGUUUUGG- -5'
29910 3' -56.1 NC_006273.1 + 177691 0.66 0.947163
Target:  5'- aGCCgCCgaCGCUGGcgcUGcGGCUGAAGCCg -3'
miRNA:   3'- cUGG-GGgaGCGACC---AC-CUGGUUUUGG- -5'
29910 3' -56.1 NC_006273.1 + 130255 0.66 0.946743
Target:  5'- cGACCgCCgguggCGUcGGUGGugCAAccgucgcAGCCg -3'
miRNA:   3'- -CUGGgGGa----GCGaCCACCugGUU-------UUGG- -5'
29910 3' -56.1 NC_006273.1 + 140358 0.67 0.942862
Target:  5'- gGACCCCCggucaCGaCUGGcGG-CCGGAcCCu -3'
miRNA:   3'- -CUGGGGGa----GC-GACCaCCuGGUUUuGG- -5'
29910 3' -56.1 NC_006273.1 + 100459 0.67 0.942862
Target:  5'- cGCCCCagccgUC-CUGGUGGuCCAGGAUg -3'
miRNA:   3'- cUGGGGg----AGcGACCACCuGGUUUUGg -5'
29910 3' -56.1 NC_006273.1 + 214851 0.67 0.942862
Target:  5'- aGCCUCCUgCGCcugcaUGGUGGcgacggucucgGCaCAAAGCCg -3'
miRNA:   3'- cUGGGGGA-GCG-----ACCACC-----------UG-GUUUUGG- -5'
29910 3' -56.1 NC_006273.1 + 41264 0.67 0.941976
Target:  5'- cGGCCUCCgaggGgUGGUGGACacgguguuuugaGAAGCCg -3'
miRNA:   3'- -CUGGGGGag--CgACCACCUGg-----------UUUUGG- -5'
29910 3' -56.1 NC_006273.1 + 37323 0.67 0.941529
Target:  5'- aACCgugCCgUUGCUuuggcggcagcggaGGUGGGCCGGGGCCc -3'
miRNA:   3'- cUGG---GGgAGCGA--------------CCACCUGGUUUUGG- -5'
29910 3' -56.1 NC_006273.1 + 195814 0.67 0.93834
Target:  5'- cGCCCCUcggUCGC-GGccgcgGGGCCGGAggGCCu -3'
miRNA:   3'- cUGGGGG---AGCGaCCa----CCUGGUUU--UGG- -5'
29910 3' -56.1 NC_006273.1 + 228308 0.67 0.93834
Target:  5'- cGGCCUCaauaUCauCUGGUGGACCGGcAUCg -3'
miRNA:   3'- -CUGGGGg---AGc-GACCACCUGGUUuUGG- -5'
29910 3' -56.1 NC_006273.1 + 922 0.67 0.93834
Target:  5'- cGCCCCUcggUCGC-GGccgcgGGGCCGGAggGCCu -3'
miRNA:   3'- cUGGGGG---AGCGaCCa----CCUGGUUU--UGG- -5'
29910 3' -56.1 NC_006273.1 + 13599 0.67 0.923431
Target:  5'- gGGCCgCCgUGCUGGaGGGCCGccccacgcccAAACCu -3'
miRNA:   3'- -CUGGgGGaGCGACCaCCUGGU----------UUUGG- -5'
29910 3' -56.1 NC_006273.1 + 207725 0.67 0.918013
Target:  5'- -uCUCCgUCGgUGGUGGACCcccccuGACUg -3'
miRNA:   3'- cuGGGGgAGCgACCACCUGGuu----UUGG- -5'
29910 3' -56.1 NC_006273.1 + 46666 0.67 0.918013
Target:  5'- cGCCUCCUCGaUGGUcGGACaucgaGGAACUc -3'
miRNA:   3'- cUGGGGGAGCgACCA-CCUGg----UUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.