miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29918 5' -50.3 NC_006273.1 + 228892 0.66 0.999067
Target:  5'- -cGAGGAGcccAACUGCGagcagccggaGCCCGcACACu -3'
miRNA:   3'- uuCUCCUU---UUGAUGCag--------UGGGC-UGUG- -5'
29918 5' -50.3 NC_006273.1 + 194250 0.66 0.999067
Target:  5'- gAGGAGGAAGACgACGaCuCCUcgGACACc -3'
miRNA:   3'- -UUCUCCUUUUGaUGCaGuGGG--CUGUG- -5'
29918 5' -50.3 NC_006273.1 + 148736 0.66 0.999067
Target:  5'- --cAGGAAGugUACGUCGaagggaCGACAUg -3'
miRNA:   3'- uucUCCUUUugAUGCAGUgg----GCUGUG- -5'
29918 5' -50.3 NC_006273.1 + 204508 0.66 0.99901
Target:  5'- cAGaAGGAAAACUcaucgcccucggcaGCGgacggcUCACCUGGCGCc -3'
miRNA:   3'- uUC-UCCUUUUGA--------------UGC------AGUGGGCUGUG- -5'
29918 5' -50.3 NC_006273.1 + 41677 0.66 0.998351
Target:  5'- uGGGGGGAuagccauccGAGCUGucggaauccuCGUCGCCCGAgAa -3'
miRNA:   3'- -UUCUCCU---------UUUGAU----------GCAGUGGGCUgUg -5'
29918 5' -50.3 NC_006273.1 + 207947 0.66 0.998351
Target:  5'- gGAGAGGAGGcCUACGUaGCCCa---- -3'
miRNA:   3'- -UUCUCCUUUuGAUGCAgUGGGcugug -5'
29918 5' -50.3 NC_006273.1 + 95526 0.66 0.998351
Target:  5'- -cGAGGAGAccACgacCGUCccACCCGGCGu -3'
miRNA:   3'- uuCUCCUUU--UGau-GCAG--UGGGCUGUg -5'
29918 5' -50.3 NC_006273.1 + 83871 0.66 0.998321
Target:  5'- --aAGGAGAaaugucaACcACGUCACCCGugGa -3'
miRNA:   3'- uucUCCUUU-------UGaUGCAGUGGGCugUg -5'
29918 5' -50.3 NC_006273.1 + 164953 0.66 0.998027
Target:  5'- cAGcAGGucGGCUACGUgCACgCCGAgACa -3'
miRNA:   3'- uUC-UCCuuUUGAUGCA-GUG-GGCUgUG- -5'
29918 5' -50.3 NC_006273.1 + 125229 0.67 0.997651
Target:  5'- cGGAGGAgaagcggagacGAACaACGUCugcACCgGGCGCg -3'
miRNA:   3'- uUCUCCU-----------UUUGaUGCAG---UGGgCUGUG- -5'
29918 5' -50.3 NC_006273.1 + 189866 0.67 0.997218
Target:  5'- cGGGGGGAGACgcgucggGCGgacCGCCgGGCAUc -3'
miRNA:   3'- uUCUCCUUUUGa------UGCa--GUGGgCUGUG- -5'
29918 5' -50.3 NC_006273.1 + 142434 0.67 0.997218
Target:  5'- uGGAGGccGACUccACGUCACaCGACGa -3'
miRNA:   3'- uUCUCCuuUUGA--UGCAGUGgGCUGUg -5'
29918 5' -50.3 NC_006273.1 + 50159 0.67 0.997218
Target:  5'- ---cGGAGAACUACGgCGCggCGGCACg -3'
miRNA:   3'- uucuCCUUUUGAUGCaGUGg-GCUGUG- -5'
29918 5' -50.3 NC_006273.1 + 149407 0.67 0.997218
Target:  5'- -cGAGGAGAuucgACGUCcgcuGCCCGaugGCACg -3'
miRNA:   3'- uuCUCCUUUuga-UGCAG----UGGGC---UGUG- -5'
29918 5' -50.3 NC_006273.1 + 17382 0.67 0.997218
Target:  5'- gGAGGGGAAGAC-GCGgUugCCG-CGCg -3'
miRNA:   3'- -UUCUCCUUUUGaUGCaGugGGCuGUG- -5'
29918 5' -50.3 NC_006273.1 + 71637 0.67 0.997171
Target:  5'- uGGGGGGAGGACgaggaggACGUCGCugcuaaaCCGcCGCg -3'
miRNA:   3'- -UUCUCCUUUUGa------UGCAGUG-------GGCuGUG- -5'
29918 5' -50.3 NC_006273.1 + 114192 0.67 0.997171
Target:  5'- cGAGAccguGGA--ACUGCGUCAguacgauCCCGugGCu -3'
miRNA:   3'- -UUCU----CCUuuUGAUGCAGU-------GGGCugUG- -5'
29918 5' -50.3 NC_006273.1 + 39204 0.67 0.996666
Target:  5'- uGGAGGAGacggcgcccuuugGACgggucaGCGUCACgCGGCAUg -3'
miRNA:   3'- uUCUCCUU-------------UUGa-----UGCAGUGgGCUGUG- -5'
29918 5' -50.3 NC_006273.1 + 140285 0.67 0.996151
Target:  5'- uGGGGGAGGGgaGCGUCACgggaCCGGC-Ca -3'
miRNA:   3'- uUCUCCUUUUgaUGCAGUG----GGCUGuG- -5'
29918 5' -50.3 NC_006273.1 + 193216 0.67 0.996151
Target:  5'- gAAGAGGAAAA--GCGUCGCgagCGGCAg -3'
miRNA:   3'- -UUCUCCUUUUgaUGCAGUGg--GCUGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.