miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 3' -46.8 NC_006273.1 + 163598 0.66 0.99999
Target:  5'- uGCUGUGcGCGCGcUGUCAgacggGCGa -3'
miRNA:   3'- -CGAUACuUGUGCaACAGUagagaCGC- -5'
29919 3' -46.8 NC_006273.1 + 79887 0.66 0.99999
Target:  5'- ---cUGAGCACGUUGUCGcugguguagcccUCgagcguguacgUCUGCGc -3'
miRNA:   3'- cgauACUUGUGCAACAGU------------AG-----------AGACGC- -5'
29919 3' -46.8 NC_006273.1 + 168536 0.67 0.999986
Target:  5'- aGCUGaagaaaGAGCACGUguacucaGUgGUCUcCUGCGg -3'
miRNA:   3'- -CGAUa-----CUUGUGCAa------CAgUAGA-GACGC- -5'
29919 3' -46.8 NC_006273.1 + 161844 0.67 0.999986
Target:  5'- uCUGgagGAGCACGUgaGUCGUCg--GCGa -3'
miRNA:   3'- cGAUa--CUUGUGCAa-CAGUAGagaCGC- -5'
29919 3' -46.8 NC_006273.1 + 201931 0.67 0.99998
Target:  5'- uGCUGUGccuGCACGUUuUCAag-CUGCGc -3'
miRNA:   3'- -CGAUACu--UGUGCAAcAGUagaGACGC- -5'
29919 3' -46.8 NC_006273.1 + 161475 0.67 0.999973
Target:  5'- aGCgaguUGGACACGUUGUuuagcCGUCucgaagaguaUCUGCa -3'
miRNA:   3'- -CGau--ACUUGUGCAACA-----GUAG----------AGACGc -5'
29919 3' -46.8 NC_006273.1 + 50132 0.67 0.999973
Target:  5'- aGCag-GAACAgGcgGgcagCGUCUCUGCGa -3'
miRNA:   3'- -CGauaCUUGUgCaaCa---GUAGAGACGC- -5'
29919 3' -46.8 NC_006273.1 + 210036 0.68 0.999936
Target:  5'- cGUUAauccUGAACGCGUuucgUGUCAcgcgUCcCUGCGa -3'
miRNA:   3'- -CGAU----ACUUGUGCA----ACAGU----AGaGACGC- -5'
29919 3' -46.8 NC_006273.1 + 24798 0.68 0.999914
Target:  5'- uUUGUGcuCACGUUgGUCAUCaccuugcUCUGCGc -3'
miRNA:   3'- cGAUACuuGUGCAA-CAGUAG-------AGACGC- -5'
29919 3' -46.8 NC_006273.1 + 84729 0.69 0.999704
Target:  5'- aGCgAUGAgGCGCGUcGUgGUCUCUuGCGu -3'
miRNA:   3'- -CGaUACU-UGUGCAaCAgUAGAGA-CGC- -5'
29919 3' -46.8 NC_006273.1 + 21810 0.7 0.99942
Target:  5'- gGCUGUGGcuAC-CGUcgGUCcuGUCUCUGCu -3'
miRNA:   3'- -CGAUACU--UGuGCAa-CAG--UAGAGACGc -5'
29919 3' -46.8 NC_006273.1 + 94011 0.7 0.99942
Target:  5'- aGCUGUcGGGCGCGUUG-CAaCUCUuGCu -3'
miRNA:   3'- -CGAUA-CUUGUGCAACaGUaGAGA-CGc -5'
29919 3' -46.8 NC_006273.1 + 190217 0.7 0.999284
Target:  5'- cGCUuUGGAaaucgagccugcCACGUUGUCAcgcaUCUCgGCGg -3'
miRNA:   3'- -CGAuACUU------------GUGCAACAGU----AGAGaCGC- -5'
29919 3' -46.8 NC_006273.1 + 74055 0.97 0.166309
Target:  5'- uGCUAUGAACACGUUGUUAcCUCUGCGc -3'
miRNA:   3'- -CGAUACUUGUGCAACAGUaGAGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.