Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29919 | 3' | -46.8 | NC_006273.1 | + | 163598 | 0.66 | 0.99999 |
Target: 5'- uGCUGUGcGCGCGcUGUCAgacggGCGa -3' miRNA: 3'- -CGAUACuUGUGCaACAGUagagaCGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 79887 | 0.66 | 0.99999 |
Target: 5'- ---cUGAGCACGUUGUCGcugguguagcccUCgagcguguacgUCUGCGc -3' miRNA: 3'- cgauACUUGUGCAACAGU------------AG-----------AGACGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 161475 | 0.67 | 0.999973 |
Target: 5'- aGCgaguUGGACACGUUGUuuagcCGUCucgaagaguaUCUGCa -3' miRNA: 3'- -CGau--ACUUGUGCAACA-----GUAG----------AGACGc -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 168536 | 0.67 | 0.999986 |
Target: 5'- aGCUGaagaaaGAGCACGUguacucaGUgGUCUcCUGCGg -3' miRNA: 3'- -CGAUa-----CUUGUGCAa------CAgUAGA-GACGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 161844 | 0.67 | 0.999986 |
Target: 5'- uCUGgagGAGCACGUgaGUCGUCg--GCGa -3' miRNA: 3'- cGAUa--CUUGUGCAa-CAGUAGagaCGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 201931 | 0.67 | 0.99998 |
Target: 5'- uGCUGUGccuGCACGUUuUCAag-CUGCGc -3' miRNA: 3'- -CGAUACu--UGUGCAAcAGUagaGACGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 50132 | 0.67 | 0.999973 |
Target: 5'- aGCag-GAACAgGcgGgcagCGUCUCUGCGa -3' miRNA: 3'- -CGauaCUUGUgCaaCa---GUAGAGACGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 210036 | 0.68 | 0.999936 |
Target: 5'- cGUUAauccUGAACGCGUuucgUGUCAcgcgUCcCUGCGa -3' miRNA: 3'- -CGAU----ACUUGUGCA----ACAGU----AGaGACGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 24798 | 0.68 | 0.999914 |
Target: 5'- uUUGUGcuCACGUUgGUCAUCaccuugcUCUGCGc -3' miRNA: 3'- cGAUACuuGUGCAA-CAGUAG-------AGACGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 84729 | 0.69 | 0.999704 |
Target: 5'- aGCgAUGAgGCGCGUcGUgGUCUCUuGCGu -3' miRNA: 3'- -CGaUACU-UGUGCAaCAgUAGAGA-CGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 21810 | 0.7 | 0.99942 |
Target: 5'- gGCUGUGGcuAC-CGUcgGUCcuGUCUCUGCu -3' miRNA: 3'- -CGAUACU--UGuGCAa-CAG--UAGAGACGc -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 94011 | 0.7 | 0.99942 |
Target: 5'- aGCUGUcGGGCGCGUUG-CAaCUCUuGCu -3' miRNA: 3'- -CGAUA-CUUGUGCAACaGUaGAGA-CGc -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 190217 | 0.7 | 0.999284 |
Target: 5'- cGCUuUGGAaaucgagccugcCACGUUGUCAcgcaUCUCgGCGg -3' miRNA: 3'- -CGAuACUU------------GUGCAACAGU----AGAGaCGC- -5' |
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29919 | 3' | -46.8 | NC_006273.1 | + | 74055 | 0.97 | 0.166309 |
Target: 5'- uGCUAUGAACACGUUGUUAcCUCUGCGc -3' miRNA: 3'- -CGAUACUUGUGCAACAGUaGAGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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