miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 234797 0.66 0.998927
Target:  5'- aGCgGCGGAG-CGCUUGCGgc--GCCa -3'
miRNA:   3'- -CGgUGUCUCuGUGAAUGCguaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 234473 0.66 0.998927
Target:  5'- gGCCGCGaccGAGGgGCgggggGCGCGgcgacaUGCCGu -3'
miRNA:   3'- -CGGUGU---CUCUgUGaa---UGCGUa-----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 9341 0.66 0.998927
Target:  5'- uCUACAGcAGAUACaUGCGuCGUaUGCCGc -3'
miRNA:   3'- cGGUGUC-UCUGUGaAUGC-GUA-ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 167337 0.66 0.998927
Target:  5'- gGCCACGGcGGCGCUggccgaGCccacaccUGCCGg -3'
miRNA:   3'- -CGGUGUCuCUGUGAaug---CGua-----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 134227 0.66 0.998927
Target:  5'- cGCCACGcccgugcccGAGGC-CUUGCGguUgguggugaagGCCGg -3'
miRNA:   3'- -CGGUGU---------CUCUGuGAAUGCguAa---------CGGC- -5'
29919 5' -50.9 NC_006273.1 + 1266 0.66 0.998927
Target:  5'- gGUCGCAGcgcGACGCgggcACGCugcUGCCGc -3'
miRNA:   3'- -CGGUGUCu--CUGUGaa--UGCGua-ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 61265 0.66 0.998927
Target:  5'- aGCCACuGcaGCGCggcGCGCGcgGCCGa -3'
miRNA:   3'- -CGGUGuCucUGUGaa-UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 185014 0.66 0.998927
Target:  5'- aGUCGCGcguuGGGACACUgg-GCGUUGuuGa -3'
miRNA:   3'- -CGGUGU----CUCUGUGAaugCGUAACggC- -5'
29919 5' -50.9 NC_006273.1 + 68181 0.66 0.998927
Target:  5'- gGCCGCu--GACGCUguuUACGCcg-GCCu -3'
miRNA:   3'- -CGGUGucuCUGUGA---AUGCGuaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 194859 0.66 0.998927
Target:  5'- aGCgGCGGAG-CGCUUGCGgc--GCCa -3'
miRNA:   3'- -CGgUGUCUCuGUGAAUGCguaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 39580 0.66 0.998927
Target:  5'- gGCCGCGaccGAGGgGCgggggGCGCGgcgacaUGCCGu -3'
miRNA:   3'- -CGGUGU---CUCUgUGaa---UGCGUa-----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 66748 0.66 0.998927
Target:  5'- uGUCAUcGAGACGCUggUGCGCGac-CCGg -3'
miRNA:   3'- -CGGUGuCUCUGUGA--AUGCGUaacGGC- -5'
29919 5' -50.9 NC_006273.1 + 156287 0.66 0.998927
Target:  5'- uCUACGGGGACACggACaGCGUguuUGuCCGc -3'
miRNA:   3'- cGGUGUCUCUGUGaaUG-CGUA---AC-GGC- -5'
29919 5' -50.9 NC_006273.1 + 196159 0.66 0.998927
Target:  5'- gGUCGCAGcgcGACGCgggcACGCugcUGCCGc -3'
miRNA:   3'- -CGGUGUCu--CUGUGaa--UGCGua-ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 196838 0.66 0.998703
Target:  5'- cCCGCGcGGugGCUggguUGCGCGgcgggGCCGg -3'
miRNA:   3'- cGGUGUcUCugUGA----AUGCGUaa---CGGC- -5'
29919 5' -50.9 NC_006273.1 + 124438 0.66 0.998703
Target:  5'- gGCCGCGcGGGCG--UGCGCGgcucGCCGa -3'
miRNA:   3'- -CGGUGUcUCUGUgaAUGCGUaa--CGGC- -5'
29919 5' -50.9 NC_006273.1 + 229115 0.66 0.998703
Target:  5'- cGCCACAGuacccGGCGCUgguuguuuCGCc--GCCGg -3'
miRNA:   3'- -CGGUGUCu----CUGUGAau------GCGuaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 51133 0.66 0.998703
Target:  5'- aGCCACAcAGACACcUACGUGggGaCGa -3'
miRNA:   3'- -CGGUGUcUCUGUGaAUGCGUaaCgGC- -5'
29919 5' -50.9 NC_006273.1 + 106227 0.66 0.998703
Target:  5'- uGCCGCGG-GugGCcagcgGCGCcgguUUGCCu -3'
miRNA:   3'- -CGGUGUCuCugUGaa---UGCGu---AACGGc -5'
29919 5' -50.9 NC_006273.1 + 199037 0.66 0.998703
Target:  5'- aCCuCAGGGGCuucgUGCGCGUgggGCUGg -3'
miRNA:   3'- cGGuGUCUCUGuga-AUGCGUAa--CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.