miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 184780 0.66 0.998103
Target:  5'- gGCUAUAGuuGCGCagcACGCAUucguacaUGCCGg -3'
miRNA:   3'- -CGGUGUCucUGUGaa-UGCGUA-------ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 45232 0.66 0.997783
Target:  5'- uGCUGCuGAaGCACUUGC-CcgUGCCGc -3'
miRNA:   3'- -CGGUGuCUcUGUGAAUGcGuaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 61930 0.66 0.997783
Target:  5'- gGCgGCGGAGACGaggACcgGUUGCCGu -3'
miRNA:   3'- -CGgUGUCUCUGUgaaUGcgUAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 112950 0.66 0.997783
Target:  5'- cGCCuACGGAcacGCGCUUugGgAggGCCGc -3'
miRNA:   3'- -CGG-UGUCUc--UGUGAAugCgUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 155687 0.66 0.997783
Target:  5'- gGCUACGGccuCACUUcGCGCAcgGCCa -3'
miRNA:   3'- -CGGUGUCucuGUGAA-UGCGUaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 163143 0.66 0.997783
Target:  5'- gGCgGCGGAGGCACcacCGCA--GUCGg -3'
miRNA:   3'- -CGgUGUCUCUGUGaauGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 196805 0.66 0.997783
Target:  5'- uGCUGCGGcuggcuGGCGCUggGCGCggUGCUGc -3'
miRNA:   3'- -CGGUGUCu-----CUGUGAa-UGCGuaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 194143 0.66 0.997783
Target:  5'- aCCGCuGAGGCGagcUGCGUGUgcgUGCCGu -3'
miRNA:   3'- cGGUGuCUCUGUga-AUGCGUA---ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 62652 0.66 0.998137
Target:  5'- cGCCaACcuAGACGCUUACGCGcgcgugUGCg- -3'
miRNA:   3'- -CGG-UGucUCUGUGAAUGCGUa-----ACGgc -5'
29919 5' -50.9 NC_006273.1 + 72007 0.66 0.997375
Target:  5'- cGUCuCGGAGACgaGCUcguagACGCGcUGCCGc -3'
miRNA:   3'- -CGGuGUCUCUG--UGAa----UGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 58065 0.66 0.997375
Target:  5'- uGCCGCcuGGAacaGACACUgcguCGCcUUGCCc -3'
miRNA:   3'- -CGGUG--UCU---CUGUGAau--GCGuAACGGc -5'
29919 5' -50.9 NC_006273.1 + 151733 0.66 0.998137
Target:  5'- cGCCGCGucGcGCGcCUUGCGCAcgGCCu -3'
miRNA:   3'- -CGGUGUcuC-UGU-GAAUGCGUaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 187129 0.66 0.998137
Target:  5'- uGCUGCAGAuACGCUUGgGCuc-GCCu -3'
miRNA:   3'- -CGGUGUCUcUGUGAAUgCGuaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 191793 0.66 0.998703
Target:  5'- aGCCACccGGACACgcgcCGCGgcacUUGCCu -3'
miRNA:   3'- -CGGUGucUCUGUGaau-GCGU----AACGGc -5'
29919 5' -50.9 NC_006273.1 + 51133 0.66 0.998703
Target:  5'- aGCCACAcAGACACcUACGUGggGaCGa -3'
miRNA:   3'- -CGGUGUcUCUGUGaAUGCGUaaCgGC- -5'
29919 5' -50.9 NC_006273.1 + 185014 0.66 0.998927
Target:  5'- aGUCGCGcguuGGGACACUgg-GCGUUGuuGa -3'
miRNA:   3'- -CGGUGU----CUCUGUGAaugCGUAACggC- -5'
29919 5' -50.9 NC_006273.1 + 185249 0.66 0.998264
Target:  5'- uUCGCAGAGACGCUgccCGCcuguuccugcuccguGUgucgGCCGc -3'
miRNA:   3'- cGGUGUCUCUGUGAau-GCG---------------UAa---CGGC- -5'
29919 5' -50.9 NC_006273.1 + 45454 0.66 0.998703
Target:  5'- aGCUGCAGAcGGCugUgucGCGCGUgUGCgCGc -3'
miRNA:   3'- -CGGUGUCU-CUGugAa--UGCGUA-ACG-GC- -5'
29919 5' -50.9 NC_006273.1 + 229115 0.66 0.998703
Target:  5'- cGCCACAGuacccGGCGCUgguuguuuCGCc--GCCGg -3'
miRNA:   3'- -CGGUGUCu----CUGUGAau------GCGuaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 121037 0.66 0.998703
Target:  5'- cCCugGGcGGCACccuCGUcgUGCCGg -3'
miRNA:   3'- cGGugUCuCUGUGaauGCGuaACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.