miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 74092 1.11 0.009888
Target:  5'- cGCCACAGAGACACUUACGCAUUGCCGc -3'
miRNA:   3'- -CGGUGUCUCUGUGAAUGCGUAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 62178 0.79 0.617188
Target:  5'- uGCCACGGAGGCGCggcccUACGUcaAUUGUCGc -3'
miRNA:   3'- -CGGUGUCUCUGUGa----AUGCG--UAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 144759 0.78 0.678949
Target:  5'- uGCUGCGGAGGCACg-ACGCGgcgGCCGu -3'
miRNA:   3'- -CGGUGUCUCUGUGaaUGCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 204037 0.77 0.719454
Target:  5'- cGCCGCAGAGACGug-GCGUAcugGCCGu -3'
miRNA:   3'- -CGGUGUCUCUGUgaaUGCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 177367 0.77 0.749067
Target:  5'- aCCACGGAGACGCcagACaggGCGUUGCCc -3'
miRNA:   3'- cGGUGUCUCUGUGaa-UG---CGUAACGGc -5'
29919 5' -50.9 NC_006273.1 + 38597 0.76 0.801637
Target:  5'- aGCCGCAGcacAGACGCUgguucaggugccgACGCAcgGCCGu -3'
miRNA:   3'- -CGGUGUC---UCUGUGAa------------UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 233490 0.76 0.801637
Target:  5'- aGCCGCAGcacAGACGCUgguucaggugccgACGCAcgGCCGu -3'
miRNA:   3'- -CGGUGUC---UCUGUGAa------------UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 16444 0.75 0.822764
Target:  5'- cGUCACGGucauGACACcgACGCGUUGgCCGc -3'
miRNA:   3'- -CGGUGUCu---CUGUGaaUGCGUAAC-GGC- -5'
29919 5' -50.9 NC_006273.1 + 93947 0.75 0.847735
Target:  5'- cCCGCGGgAGGCGCgcccUGCGCAUgcGCCGg -3'
miRNA:   3'- cGGUGUC-UCUGUGa---AUGCGUAa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 20131 0.74 0.855671
Target:  5'- aGCCggcagaggauGCAcGAGACGCggACGCAgaacgUGCCGa -3'
miRNA:   3'- -CGG----------UGU-CUCUGUGaaUGCGUa----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 139960 0.74 0.878221
Target:  5'- cCCACGGGGACG--UGCGUucgUGCCGg -3'
miRNA:   3'- cGGUGUCUCUGUgaAUGCGua-ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 193362 0.73 0.892149
Target:  5'- cGCCuccCGGAGGCuCUUugGCuccagUGCCGa -3'
miRNA:   3'- -CGGu--GUCUCUGuGAAugCGua---ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 98545 0.73 0.892149
Target:  5'- aGCaCACGGAGGCGC--ACGCGaUGCUGc -3'
miRNA:   3'- -CG-GUGUCUCUGUGaaUGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 133761 0.73 0.905152
Target:  5'- gGCCAUGGAGcuGCACUcACGCg--GCCGu -3'
miRNA:   3'- -CGGUGUCUC--UGUGAaUGCGuaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 167021 0.72 0.922866
Target:  5'- uGCCGCAcGAGGCGCUgauuUGCAgcugcacgGCCGu -3'
miRNA:   3'- -CGGUGU-CUCUGUGAau--GCGUaa------CGGC- -5'
29919 5' -50.9 NC_006273.1 + 68473 0.72 0.928286
Target:  5'- aGCCGCuGGAGACACUU-CGCGa-GCUGu -3'
miRNA:   3'- -CGGUG-UCUCUGUGAAuGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 56138 0.72 0.933464
Target:  5'- gGCCGCGGAGGCGgCgaccgACGCGgagGUCGu -3'
miRNA:   3'- -CGGUGUCUCUGU-Gaa---UGCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 2028 0.71 0.951766
Target:  5'- cGCCgGCGGGGACGCgccgUGCGCGauggcaggaGCCGu -3'
miRNA:   3'- -CGG-UGUCUCUGUGa---AUGCGUaa-------CGGC- -5'
29919 5' -50.9 NC_006273.1 + 190951 0.71 0.951766
Target:  5'- gGCCGCGGAaACACUgcCGCAUgcGCUGc -3'
miRNA:   3'- -CGGUGUCUcUGUGAauGCGUAa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 196921 0.71 0.951766
Target:  5'- cGCCgGCGGGGACGCgccgUGCGCGauggcaggaGCCGu -3'
miRNA:   3'- -CGG-UGUCUCUGUGa---AUGCGUaa-------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.