miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 102995 0.71 0.955751
Target:  5'- cGCCAgacCGGAGACGCcgucGCGCA--GCCGu -3'
miRNA:   3'- -CGGU---GUCUCUGUGaa--UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 153677 0.71 0.955751
Target:  5'- cGCCACAGAaACAgUUuuGCAgaucgUGCCGc -3'
miRNA:   3'- -CGGUGUCUcUGUgAAugCGUa----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 82785 0.71 0.959505
Target:  5'- gGCCACcGAGACACacccgcugGCGCAggaccUGCUGc -3'
miRNA:   3'- -CGGUGuCUCUGUGaa------UGCGUa----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 33393 0.7 0.969438
Target:  5'- uGCCAgAGuAGGCGCUggacGCGCAccGCCu -3'
miRNA:   3'- -CGGUgUC-UCUGUGAa---UGCGUaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 1518 0.7 0.972324
Target:  5'- cGCCGCGGAcuACGCUgcuUGCGCAcagGCCc -3'
miRNA:   3'- -CGGUGUCUc-UGUGA---AUGCGUaa-CGGc -5'
29919 5' -50.9 NC_006273.1 + 167178 0.7 0.972324
Target:  5'- gGCCACGGcGGGCGCagcggcCGCGgagGCCGg -3'
miRNA:   3'- -CGGUGUC-UCUGUGaau---GCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 170860 0.7 0.972324
Target:  5'- gGCgGCAGGGACACcgAUGUcgaGCCGg -3'
miRNA:   3'- -CGgUGUCUCUGUGaaUGCGuaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 30509 0.7 0.975009
Target:  5'- cGCCACGGaAGAU-CUggauCGCAUggagGCCGg -3'
miRNA:   3'- -CGGUGUC-UCUGuGAau--GCGUAa---CGGC- -5'
29919 5' -50.9 NC_006273.1 + 105842 0.7 0.977498
Target:  5'- cGUCACAgccGAGGCgGCgcgGCGCAgcGCCGg -3'
miRNA:   3'- -CGGUGU---CUCUG-UGaa-UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 137014 0.69 0.979799
Target:  5'- aCUACGacGGGACAgcgGCGCGUUGCCa -3'
miRNA:   3'- cGGUGU--CUCUGUgaaUGCGUAACGGc -5'
29919 5' -50.9 NC_006273.1 + 190467 0.69 0.981921
Target:  5'- gGCCACAauaaucguGGGaACGCcccaUugGCAUUGCCa -3'
miRNA:   3'- -CGGUGU--------CUC-UGUGa---AugCGUAACGGc -5'
29919 5' -50.9 NC_006273.1 + 167425 0.69 0.982124
Target:  5'- uCCACAGuggcGGGCGCgcucucggcggucagUACGguUUGCCGa -3'
miRNA:   3'- cGGUGUC----UCUGUGa--------------AUGCguAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 173787 0.69 0.983871
Target:  5'- cGCCAuCAuGGACGCgcGCGCGgugGCCa -3'
miRNA:   3'- -CGGU-GUcUCUGUGaaUGCGUaa-CGGc -5'
29919 5' -50.9 NC_006273.1 + 82840 0.69 0.985138
Target:  5'- uGCUGCAGguggccgagcgccuGGGCGCcgUGCGCAUaGCCa -3'
miRNA:   3'- -CGGUGUC--------------UCUGUGa-AUGCGUAaCGGc -5'
29919 5' -50.9 NC_006273.1 + 173191 0.69 0.985657
Target:  5'- gGCCACGGcgcGACAauugACGUAggGCCGc -3'
miRNA:   3'- -CGGUGUCu--CUGUgaa-UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 40407 0.69 0.987288
Target:  5'- gGCCACAGGcGGCGCauucgaUACGCugcuuuugGCCGu -3'
miRNA:   3'- -CGGUGUCU-CUGUGa-----AUGCGuaa-----CGGC- -5'
29919 5' -50.9 NC_006273.1 + 36847 0.68 0.990118
Target:  5'- --gGCAGGGACACgcgcUACGUA--GCCGg -3'
miRNA:   3'- cggUGUCUCUGUGa---AUGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 153635 0.68 0.990118
Target:  5'- aGCCAC-GAGACGCUggaacgcuacCGCGUgugcgaGCCGc -3'
miRNA:   3'- -CGGUGuCUCUGUGAau--------GCGUAa-----CGGC- -5'
29919 5' -50.9 NC_006273.1 + 2340 0.68 0.992429
Target:  5'- gGCgGCGGAGcugucGCACUUucugcGCGCGggcgUGCUGg -3'
miRNA:   3'- -CGgUGUCUC-----UGUGAA-----UGCGUa---ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 197233 0.68 0.992429
Target:  5'- gGCgGCGGAGcugucGCACUUucugcGCGCGggcgUGCUGg -3'
miRNA:   3'- -CGgUGUCUC-----UGUGAA-----UGCGUa---ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.