miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 124438 0.66 0.998703
Target:  5'- gGCCGCGcGGGCG--UGCGCGgcucGCCGa -3'
miRNA:   3'- -CGGUGUcUCUGUgaAUGCGUaa--CGGC- -5'
29919 5' -50.9 NC_006273.1 + 191793 0.66 0.998703
Target:  5'- aGCCACccGGACACgcgcCGCGgcacUUGCCu -3'
miRNA:   3'- -CGGUGucUCUGUGaau-GCGU----AACGGc -5'
29919 5' -50.9 NC_006273.1 + 45454 0.66 0.998703
Target:  5'- aGCUGCAGAcGGCugUgucGCGCGUgUGCgCGc -3'
miRNA:   3'- -CGGUGUCU-CUGugAa--UGCGUA-ACG-GC- -5'
29919 5' -50.9 NC_006273.1 + 229115 0.66 0.998703
Target:  5'- cGCCACAGuacccGGCGCUgguuguuuCGCc--GCCGg -3'
miRNA:   3'- -CGGUGUCu----CUGUGAau------GCGuaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 121037 0.66 0.998703
Target:  5'- cCCugGGcGGCACccuCGUcgUGCCGg -3'
miRNA:   3'- cGGugUCuCUGUGaauGCGuaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 113141 0.66 0.998442
Target:  5'- gGCCGCAGAgGGCGCgc-CGCucagucGCCu -3'
miRNA:   3'- -CGGUGUCU-CUGUGaauGCGuaa---CGGc -5'
29919 5' -50.9 NC_006273.1 + 45549 0.66 0.998442
Target:  5'- uGCCGCAGAuGcCACccgGCGUg--GCCGa -3'
miRNA:   3'- -CGGUGUCU-CuGUGaa-UGCGuaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 185249 0.66 0.998264
Target:  5'- uUCGCAGAGACGCUgccCGCcuguuccugcuccguGUgucgGCCGc -3'
miRNA:   3'- cGGUGUCUCUGUGAau-GCG---------------UAa---CGGC- -5'
29919 5' -50.9 NC_006273.1 + 151733 0.66 0.998137
Target:  5'- cGCCGCGucGcGCGcCUUGCGCAcgGCCu -3'
miRNA:   3'- -CGGUGUcuC-UGU-GAAUGCGUaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 133077 0.66 0.998137
Target:  5'- cGCCGCAc-GAC-CUgccCGCGUUGCCc -3'
miRNA:   3'- -CGGUGUcuCUGuGAau-GCGUAACGGc -5'
29919 5' -50.9 NC_006273.1 + 202550 0.66 0.998137
Target:  5'- aCCGCAGcGugGCcgGCGUGgcgGCCGa -3'
miRNA:   3'- cGGUGUCuCugUGaaUGCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 106464 0.66 0.998137
Target:  5'- uUCACAGcuuuuuacAGACACUgcUACGCAaggcGCCGc -3'
miRNA:   3'- cGGUGUC--------UCUGUGA--AUGCGUaa--CGGC- -5'
29919 5' -50.9 NC_006273.1 + 142075 0.66 0.998137
Target:  5'- cGCCAgCGGcGACgguuaccacgGCUUGCGC--UGCCGc -3'
miRNA:   3'- -CGGU-GUCuCUG----------UGAAUGCGuaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 62652 0.66 0.998137
Target:  5'- cGCCaACcuAGACGCUUACGCGcgcgugUGCg- -3'
miRNA:   3'- -CGG-UGucUCUGUGAAUGCGUa-----ACGgc -5'
29919 5' -50.9 NC_006273.1 + 187129 0.66 0.998137
Target:  5'- uGCUGCAGAuACGCUUGgGCuc-GCCu -3'
miRNA:   3'- -CGGUGUCUcUGUGAAUgCGuaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 189220 0.66 0.998103
Target:  5'- uGCCGCAGGGcgguCGCUagcguguCGCAgcguucgccaccgUUGCCGu -3'
miRNA:   3'- -CGGUGUCUCu---GUGAau-----GCGU-------------AACGGC- -5'
29919 5' -50.9 NC_006273.1 + 184780 0.66 0.998103
Target:  5'- gGCUAUAGuuGCGCagcACGCAUucguacaUGCCGg -3'
miRNA:   3'- -CGGUGUCucUGUGaa-UGCGUA-------ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 73175 0.66 0.997783
Target:  5'- aCgGCGGAGGCGgUagACGCGgcGCCGc -3'
miRNA:   3'- cGgUGUCUCUGUgAa-UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 1913 0.66 0.997783
Target:  5'- uGCUGCGGcuggcuGGCGCUggGCGCggUGCUGc -3'
miRNA:   3'- -CGGUGUCu-----CUGUGAa-UGCGuaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 196805 0.66 0.997783
Target:  5'- uGCUGCGGcuggcuGGCGCUggGCGCggUGCUGc -3'
miRNA:   3'- -CGGUGUCu-----CUGUGAa-UGCGuaACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.