miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 155687 0.66 0.997783
Target:  5'- gGCUACGGccuCACUUcGCGCAcgGCCa -3'
miRNA:   3'- -CGGUGUCucuGUGAA-UGCGUaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 112950 0.66 0.997783
Target:  5'- cGCCuACGGAcacGCGCUUugGgAggGCCGc -3'
miRNA:   3'- -CGG-UGUCUc--UGUGAAugCgUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 61930 0.66 0.997783
Target:  5'- gGCgGCGGAGACGaggACcgGUUGCCGu -3'
miRNA:   3'- -CGgUGUCUCUGUgaaUGcgUAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 45232 0.66 0.997783
Target:  5'- uGCUGCuGAaGCACUUGC-CcgUGCCGc -3'
miRNA:   3'- -CGGUGuCUcUGUGAAUGcGuaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 73175 0.66 0.997783
Target:  5'- aCgGCGGAGGCGgUagACGCGgcGCCGc -3'
miRNA:   3'- cGgUGUCUCUGUgAa-UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 163143 0.66 0.997783
Target:  5'- gGCgGCGGAGGCACcacCGCA--GUCGg -3'
miRNA:   3'- -CGgUGUCUCUGUGaauGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 147581 0.66 0.997375
Target:  5'- gGCgGCGGGGGCA---GCGgguUAUUGCCGg -3'
miRNA:   3'- -CGgUGUCUCUGUgaaUGC---GUAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 179157 0.66 0.997375
Target:  5'- -gCGCGGAucgGACACUUuaggcgGCGCAgcGCCa -3'
miRNA:   3'- cgGUGUCU---CUGUGAA------UGCGUaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 58065 0.66 0.997375
Target:  5'- uGCCGCcuGGAacaGACACUgcguCGCcUUGCCc -3'
miRNA:   3'- -CGGUG--UCU---CUGUGAau--GCGuAACGGc -5'
29919 5' -50.9 NC_006273.1 + 72007 0.66 0.997375
Target:  5'- cGUCuCGGAGACgaGCUcguagACGCGcUGCCGc -3'
miRNA:   3'- -CGGuGUCUCUG--UGAa----UGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 175755 0.66 0.997375
Target:  5'- aGCC-CGGGcGGCGuguuUUUGCGCAUcGCCGu -3'
miRNA:   3'- -CGGuGUCU-CUGU----GAAUGCGUAaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 201952 0.67 0.996906
Target:  5'- aGCUGCGccGGGGCugUcGCGCGccGCCGa -3'
miRNA:   3'- -CGGUGU--CUCUGugAaUGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 94061 0.67 0.996906
Target:  5'- uCCACuGGAuGCGCgucgUGCGCAUgcGCCGg -3'
miRNA:   3'- cGGUG-UCUcUGUGa---AUGCGUAa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 234919 0.67 0.99637
Target:  5'- uGCCGCGGGuGuguCGCggGCGUG-UGCCGg -3'
miRNA:   3'- -CGGUGUCU-Cu--GUGaaUGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 194981 0.67 0.99637
Target:  5'- uGCCGCGGGuGuguCGCggGCGUG-UGCCGg -3'
miRNA:   3'- -CGGUGUCU-Cu--GUGaaUGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 116238 0.67 0.99637
Target:  5'- uCCACGGAGcaACGuCaUGCGCGgcGCCGu -3'
miRNA:   3'- cGGUGUCUC--UGU-GaAUGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 88 0.67 0.99637
Target:  5'- uGCCGCGGGuGuguCGCggGCGUG-UGCCGg -3'
miRNA:   3'- -CGGUGUCU-Cu--GUGaaUGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 222832 0.67 0.99637
Target:  5'- gGCCGCAGAGcaGCaACggACGCGUcaucucGCCu -3'
miRNA:   3'- -CGGUGUCUC--UG-UGaaUGCGUAa-----CGGc -5'
29919 5' -50.9 NC_006273.1 + 192019 0.67 0.99637
Target:  5'- cGCCAUcaGGAGAUGgUggaucaGCGUUGCCa -3'
miRNA:   3'- -CGGUG--UCUCUGUgAaug---CGUAACGGc -5'
29919 5' -50.9 NC_006273.1 + 174286 0.67 0.99637
Target:  5'- aGCCGCuGGAGGCAUgggaGCAggGCuCGg -3'
miRNA:   3'- -CGGUG-UCUCUGUGaaugCGUaaCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.