miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 88 0.67 0.99637
Target:  5'- uGCCGCGGGuGuguCGCggGCGUG-UGCCGg -3'
miRNA:   3'- -CGGUGUCU-Cu--GUGaaUGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 1266 0.66 0.998927
Target:  5'- gGUCGCAGcgcGACGCgggcACGCugcUGCCGc -3'
miRNA:   3'- -CGGUGUCu--CUGUGaa--UGCGua-ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 1518 0.7 0.972324
Target:  5'- cGCCGCGGAcuACGCUgcuUGCGCAcagGCCc -3'
miRNA:   3'- -CGGUGUCUc-UGUGA---AUGCGUaa-CGGc -5'
29919 5' -50.9 NC_006273.1 + 1913 0.66 0.997783
Target:  5'- uGCUGCGGcuggcuGGCGCUggGCGCggUGCUGc -3'
miRNA:   3'- -CGGUGUCu-----CUGUGAa-UGCGuaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 1946 0.66 0.998703
Target:  5'- cCCGCGcGGugGCUggguUGCGCGgcgggGCCGg -3'
miRNA:   3'- cGGUGUcUCugUGA----AUGCGUaa---CGGC- -5'
29919 5' -50.9 NC_006273.1 + 2028 0.71 0.951766
Target:  5'- cGCCgGCGGGGACGCgccgUGCGCGauggcaggaGCCGu -3'
miRNA:   3'- -CGG-UGUCUCUGUGa---AUGCGUaa-------CGGC- -5'
29919 5' -50.9 NC_006273.1 + 2340 0.68 0.992429
Target:  5'- gGCgGCGGAGcugucGCACUUucugcGCGCGggcgUGCUGg -3'
miRNA:   3'- -CGgUGUCUC-----UGUGAA-----UGCGUa---ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 9341 0.66 0.998927
Target:  5'- uCUACAGcAGAUACaUGCGuCGUaUGCCGc -3'
miRNA:   3'- cGGUGUC-UCUGUGaAUGC-GUA-ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 16444 0.75 0.822764
Target:  5'- cGUCACGGucauGACACcgACGCGUUGgCCGc -3'
miRNA:   3'- -CGGUGUCu---CUGUGaaUGCGUAAC-GGC- -5'
29919 5' -50.9 NC_006273.1 + 20131 0.74 0.855671
Target:  5'- aGCCggcagaggauGCAcGAGACGCggACGCAgaacgUGCCGa -3'
miRNA:   3'- -CGG----------UGU-CUCUGUGaaUGCGUa----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 30509 0.7 0.975009
Target:  5'- cGCCACGGaAGAU-CUggauCGCAUggagGCCGg -3'
miRNA:   3'- -CGGUGUC-UCUGuGAau--GCGUAa---CGGC- -5'
29919 5' -50.9 NC_006273.1 + 33393 0.7 0.969438
Target:  5'- uGCCAgAGuAGGCGCUggacGCGCAccGCCu -3'
miRNA:   3'- -CGGUgUC-UCUGUGAa---UGCGUaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 36847 0.68 0.990118
Target:  5'- --gGCAGGGACACgcgcUACGUA--GCCGg -3'
miRNA:   3'- cggUGUCUCUGUGa---AUGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 38597 0.76 0.801637
Target:  5'- aGCCGCAGcacAGACGCUgguucaggugccgACGCAcgGCCGu -3'
miRNA:   3'- -CGGUGUC---UCUGUGAa------------UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 39580 0.66 0.998927
Target:  5'- gGCCGCGaccGAGGgGCgggggGCGCGgcgacaUGCCGu -3'
miRNA:   3'- -CGGUGU---CUCUgUGaa---UGCGUa-----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 40407 0.69 0.987288
Target:  5'- gGCCACAGGcGGCGCauucgaUACGCugcuuuugGCCGu -3'
miRNA:   3'- -CGGUGUCU-CUGUGa-----AUGCGuaa-----CGGC- -5'
29919 5' -50.9 NC_006273.1 + 45232 0.66 0.997783
Target:  5'- uGCUGCuGAaGCACUUGC-CcgUGCCGc -3'
miRNA:   3'- -CGGUGuCUcUGUGAAUGcGuaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 45454 0.66 0.998703
Target:  5'- aGCUGCAGAcGGCugUgucGCGCGUgUGCgCGc -3'
miRNA:   3'- -CGGUGUCU-CUGugAa--UGCGUA-ACG-GC- -5'
29919 5' -50.9 NC_006273.1 + 45549 0.66 0.998442
Target:  5'- uGCCGCAGAuGcCACccgGCGUg--GCCGa -3'
miRNA:   3'- -CGGUGUCU-CuGUGaa-UGCGuaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 51133 0.66 0.998703
Target:  5'- aGCCACAcAGACACcUACGUGggGaCGa -3'
miRNA:   3'- -CGGUGUcUCUGUGaAUGCGUaaCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.