miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 55674 0.67 0.994287
Target:  5'- cGCgACuGGGACAg-UAUGCAUUGCaCGc -3'
miRNA:   3'- -CGgUGuCUCUGUgaAUGCGUAACG-GC- -5'
29919 5' -50.9 NC_006273.1 + 56138 0.72 0.933464
Target:  5'- gGCCGCGGAGGCGgCgaccgACGCGgagGUCGu -3'
miRNA:   3'- -CGGUGUCUCUGU-Gaa---UGCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 58065 0.66 0.997375
Target:  5'- uGCCGCcuGGAacaGACACUgcguCGCcUUGCCc -3'
miRNA:   3'- -CGGUG--UCU---CUGUGAau--GCGuAACGGc -5'
29919 5' -50.9 NC_006273.1 + 61265 0.66 0.998927
Target:  5'- aGCCACuGcaGCGCggcGCGCGcgGCCGa -3'
miRNA:   3'- -CGGUGuCucUGUGaa-UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 61930 0.66 0.997783
Target:  5'- gGCgGCGGAGACGaggACcgGUUGCCGu -3'
miRNA:   3'- -CGgUGUCUCUGUgaaUGcgUAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 62178 0.79 0.617188
Target:  5'- uGCCACGGAGGCGCggcccUACGUcaAUUGUCGc -3'
miRNA:   3'- -CGGUGUCUCUGUGa----AUGCG--UAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 62652 0.66 0.998137
Target:  5'- cGCCaACcuAGACGCUUACGCGcgcgugUGCg- -3'
miRNA:   3'- -CGG-UGucUCUGUGAAUGCGUa-----ACGgc -5'
29919 5' -50.9 NC_006273.1 + 66748 0.66 0.998927
Target:  5'- uGUCAUcGAGACGCUggUGCGCGac-CCGg -3'
miRNA:   3'- -CGGUGuCUCUGUGA--AUGCGUaacGGC- -5'
29919 5' -50.9 NC_006273.1 + 68181 0.66 0.998927
Target:  5'- gGCCGCu--GACGCUguuUACGCcg-GCCu -3'
miRNA:   3'- -CGGUGucuCUGUGA---AUGCGuaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 68473 0.72 0.928286
Target:  5'- aGCCGCuGGAGACACUU-CGCGa-GCUGu -3'
miRNA:   3'- -CGGUG-UCUCUGUGAAuGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 72007 0.66 0.997375
Target:  5'- cGUCuCGGAGACgaGCUcguagACGCGcUGCCGc -3'
miRNA:   3'- -CGGuGUCUCUG--UGAa----UGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 73175 0.66 0.997783
Target:  5'- aCgGCGGAGGCGgUagACGCGgcGCCGc -3'
miRNA:   3'- cGgUGUCUCUGUgAa-UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 73894 0.67 0.994287
Target:  5'- cGCCACAGAGAUgg--AC-CAcUGCCGc -3'
miRNA:   3'- -CGGUGUCUCUGugaaUGcGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 74092 1.11 0.009888
Target:  5'- cGCCACAGAGACACUUACGCAUUGCCGc -3'
miRNA:   3'- -CGGUGUCUCUGUGAAUGCGUAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 82018 0.67 0.995068
Target:  5'- -aCGCAG-GGCAC--GCGCGUgccGCCGg -3'
miRNA:   3'- cgGUGUCuCUGUGaaUGCGUAa--CGGC- -5'
29919 5' -50.9 NC_006273.1 + 82785 0.71 0.959505
Target:  5'- gGCCACcGAGACACacccgcugGCGCAggaccUGCUGc -3'
miRNA:   3'- -CGGUGuCUCUGUGaa------UGCGUa----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 82840 0.69 0.985138
Target:  5'- uGCUGCAGguggccgagcgccuGGGCGCcgUGCGCAUaGCCa -3'
miRNA:   3'- -CGGUGUC--------------UCUGUGa-AUGCGUAaCGGc -5'
29919 5' -50.9 NC_006273.1 + 87703 0.67 0.994287
Target:  5'- gGCCACGGGGGC---UGCGacuGUUGCUGc -3'
miRNA:   3'- -CGGUGUCUCUGugaAUGCg--UAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 93947 0.75 0.847735
Target:  5'- cCCGCGGgAGGCGCgcccUGCGCAUgcGCCGg -3'
miRNA:   3'- cGGUGUC-UCUGUGa---AUGCGUAa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 94061 0.67 0.996906
Target:  5'- uCCACuGGAuGCGCgucgUGCGCAUgcGCCGg -3'
miRNA:   3'- cGGUG-UCUcUGUGa---AUGCGUAa-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.