miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 234919 0.67 0.99637
Target:  5'- uGCCGCGGGuGuguCGCggGCGUG-UGCCGg -3'
miRNA:   3'- -CGGUGUCU-Cu--GUGaaUGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 234797 0.66 0.998927
Target:  5'- aGCgGCGGAG-CGCUUGCGgc--GCCa -3'
miRNA:   3'- -CGgUGUCUCuGUGAAUGCguaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 234473 0.66 0.998927
Target:  5'- gGCCGCGaccGAGGgGCgggggGCGCGgcgacaUGCCGu -3'
miRNA:   3'- -CGGUGU---CUCUgUGaa---UGCGUa-----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 233490 0.76 0.801637
Target:  5'- aGCCGCAGcacAGACGCUgguucaggugccgACGCAcgGCCGu -3'
miRNA:   3'- -CGGUGUC---UCUGUGAa------------UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 229115 0.66 0.998703
Target:  5'- cGCCACAGuacccGGCGCUgguuguuuCGCc--GCCGg -3'
miRNA:   3'- -CGGUGUCu----CUGUGAau------GCGuaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 222872 0.67 0.995759
Target:  5'- -gCGCAGAGGC----ACGCAUUcGCCGc -3'
miRNA:   3'- cgGUGUCUCUGugaaUGCGUAA-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 222832 0.67 0.99637
Target:  5'- gGCCGCAGAGcaGCaACggACGCGUcaucucGCCu -3'
miRNA:   3'- -CGGUGUCUC--UG-UGaaUGCGUAa-----CGGc -5'
29919 5' -50.9 NC_006273.1 + 212315 0.67 0.995759
Target:  5'- aGUCACAGGGACGgUU-CGCAUUuucaGuCCGu -3'
miRNA:   3'- -CGGUGUCUCUGUgAAuGCGUAA----C-GGC- -5'
29919 5' -50.9 NC_006273.1 + 204037 0.77 0.719454
Target:  5'- cGCCGCAGAGACGug-GCGUAcugGCCGu -3'
miRNA:   3'- -CGGUGUCUCUGUgaaUGCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 202550 0.66 0.998137
Target:  5'- aCCGCAGcGugGCcgGCGUGgcgGCCGa -3'
miRNA:   3'- cGGUGUCuCugUGaaUGCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 202039 0.67 0.995759
Target:  5'- cGCCGCAG-GAuCGC--ACGCGgcUGCCGc -3'
miRNA:   3'- -CGGUGUCuCU-GUGaaUGCGUa-ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 201952 0.67 0.996906
Target:  5'- aGCUGCGccGGGGCugUcGCGCGccGCCGa -3'
miRNA:   3'- -CGGUGU--CUCUGugAaUGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 199037 0.66 0.998703
Target:  5'- aCCuCAGGGGCuucgUGCGCGUgggGCUGg -3'
miRNA:   3'- cGGuGUCUCUGuga-AUGCGUAa--CGGC- -5'
29919 5' -50.9 NC_006273.1 + 197233 0.68 0.992429
Target:  5'- gGCgGCGGAGcugucGCACUUucugcGCGCGggcgUGCUGg -3'
miRNA:   3'- -CGgUGUCUC-----UGUGAA-----UGCGUa---ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 196921 0.71 0.951766
Target:  5'- cGCCgGCGGGGACGCgccgUGCGCGauggcaggaGCCGu -3'
miRNA:   3'- -CGG-UGUCUCUGUGa---AUGCGUaa-------CGGC- -5'
29919 5' -50.9 NC_006273.1 + 196838 0.66 0.998703
Target:  5'- cCCGCGcGGugGCUggguUGCGCGgcgggGCCGg -3'
miRNA:   3'- cGGUGUcUCugUGA----AUGCGUaa---CGGC- -5'
29919 5' -50.9 NC_006273.1 + 196805 0.66 0.997783
Target:  5'- uGCUGCGGcuggcuGGCGCUggGCGCggUGCUGc -3'
miRNA:   3'- -CGGUGUCu-----CUGUGAa-UGCGuaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 196159 0.66 0.998927
Target:  5'- gGUCGCAGcgcGACGCgggcACGCugcUGCCGc -3'
miRNA:   3'- -CGGUGUCu--CUGUGaa--UGCGua-ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 194981 0.67 0.99637
Target:  5'- uGCCGCGGGuGuguCGCggGCGUG-UGCCGg -3'
miRNA:   3'- -CGGUGUCU-Cu--GUGaaUGCGUaACGGC- -5'
29919 5' -50.9 NC_006273.1 + 194859 0.66 0.998927
Target:  5'- aGCgGCGGAG-CGCUUGCGgc--GCCa -3'
miRNA:   3'- -CGgUGUCUCuGUGAAUGCguaaCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.