miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29919 5' -50.9 NC_006273.1 + 197233 0.68 0.992429
Target:  5'- gGCgGCGGAGcugucGCACUUucugcGCGCGggcgUGCUGg -3'
miRNA:   3'- -CGgUGUCUC-----UGUGAA-----UGCGUa---ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 167178 0.7 0.972324
Target:  5'- gGCCACGGcGGGCGCagcggcCGCGgagGCCGg -3'
miRNA:   3'- -CGGUGUC-UCUGUGaau---GCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 1518 0.7 0.972324
Target:  5'- cGCCGCGGAcuACGCUgcuUGCGCAcagGCCc -3'
miRNA:   3'- -CGGUGUCUc-UGUGA---AUGCGUaa-CGGc -5'
29919 5' -50.9 NC_006273.1 + 30509 0.7 0.975009
Target:  5'- cGCCACGGaAGAU-CUggauCGCAUggagGCCGg -3'
miRNA:   3'- -CGGUGUC-UCUGuGAau--GCGUAa---CGGC- -5'
29919 5' -50.9 NC_006273.1 + 137014 0.69 0.979799
Target:  5'- aCUACGacGGGACAgcgGCGCGUUGCCa -3'
miRNA:   3'- cGGUGU--CUCUGUgaaUGCGUAACGGc -5'
29919 5' -50.9 NC_006273.1 + 190467 0.69 0.981921
Target:  5'- gGCCACAauaaucguGGGaACGCcccaUugGCAUUGCCa -3'
miRNA:   3'- -CGGUGU--------CUC-UGUGa---AugCGUAACGGc -5'
29919 5' -50.9 NC_006273.1 + 167425 0.69 0.982124
Target:  5'- uCCACAGuggcGGGCGCgcucucggcggucagUACGguUUGCCGa -3'
miRNA:   3'- cGGUGUC----UCUGUGa--------------AUGCguAACGGC- -5'
29919 5' -50.9 NC_006273.1 + 40407 0.69 0.987288
Target:  5'- gGCCACAGGcGGCGCauucgaUACGCugcuuuugGCCGu -3'
miRNA:   3'- -CGGUGUCU-CUGUGa-----AUGCGuaa-----CGGC- -5'
29919 5' -50.9 NC_006273.1 + 153635 0.68 0.990118
Target:  5'- aGCCAC-GAGACGCUggaacgcuacCGCGUgugcgaGCCGc -3'
miRNA:   3'- -CGGUGuCUCUGUGAau--------GCGUAa-----CGGC- -5'
29919 5' -50.9 NC_006273.1 + 33393 0.7 0.969438
Target:  5'- uGCCAgAGuAGGCGCUggacGCGCAccGCCu -3'
miRNA:   3'- -CGGUgUC-UCUGUGAa---UGCGUaaCGGc -5'
29919 5' -50.9 NC_006273.1 + 102995 0.71 0.955751
Target:  5'- cGCCAgacCGGAGACGCcgucGCGCA--GCCGu -3'
miRNA:   3'- -CGGU---GUCUCUGUGaa--UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 196921 0.71 0.951766
Target:  5'- cGCCgGCGGGGACGCgccgUGCGCGauggcaggaGCCGu -3'
miRNA:   3'- -CGG-UGUCUCUGUGa---AUGCGUaa-------CGGC- -5'
29919 5' -50.9 NC_006273.1 + 144759 0.78 0.678949
Target:  5'- uGCUGCGGAGGCACg-ACGCGgcgGCCGu -3'
miRNA:   3'- -CGGUGUCUCUGUGaaUGCGUaa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 177367 0.77 0.749067
Target:  5'- aCCACGGAGACGCcagACaggGCGUUGCCc -3'
miRNA:   3'- cGGUGUCUCUGUGaa-UG---CGUAACGGc -5'
29919 5' -50.9 NC_006273.1 + 233490 0.76 0.801637
Target:  5'- aGCCGCAGcacAGACGCUgguucaggugccgACGCAcgGCCGu -3'
miRNA:   3'- -CGGUGUC---UCUGUGAa------------UGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 93947 0.75 0.847735
Target:  5'- cCCGCGGgAGGCGCgcccUGCGCAUgcGCCGg -3'
miRNA:   3'- cGGUGUC-UCUGUGa---AUGCGUAa-CGGC- -5'
29919 5' -50.9 NC_006273.1 + 20131 0.74 0.855671
Target:  5'- aGCCggcagaggauGCAcGAGACGCggACGCAgaacgUGCCGa -3'
miRNA:   3'- -CGG----------UGU-CUCUGUGaaUGCGUa----ACGGC- -5'
29919 5' -50.9 NC_006273.1 + 167021 0.72 0.922866
Target:  5'- uGCCGCAcGAGGCGCUgauuUGCAgcugcacgGCCGu -3'
miRNA:   3'- -CGGUGU-CUCUGUGAau--GCGUaa------CGGC- -5'
29919 5' -50.9 NC_006273.1 + 68473 0.72 0.928286
Target:  5'- aGCCGCuGGAGACACUU-CGCGa-GCUGu -3'
miRNA:   3'- -CGGUG-UCUCUGUGAAuGCGUaaCGGC- -5'
29919 5' -50.9 NC_006273.1 + 56138 0.72 0.933464
Target:  5'- gGCCGCGGAGGCGgCgaccgACGCGgagGUCGu -3'
miRNA:   3'- -CGGUGUCUCUGU-Gaa---UGCGUaa-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.