Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29919 | 5' | -50.9 | NC_006273.1 | + | 74092 | 1.11 | 0.009888 |
Target: 5'- cGCCACAGAGACACUUACGCAUUGCCGc -3' miRNA: 3'- -CGGUGUCUCUGUGAAUGCGUAACGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 36847 | 0.68 | 0.990118 |
Target: 5'- --gGCAGGGACACgcgcUACGUA--GCCGg -3' miRNA: 3'- cggUGUCUCUGUGa---AUGCGUaaCGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 158218 | 0.68 | 0.992429 |
Target: 5'- uGCaGCGuGAGGCGCgggcGCGCGUcgGCCGg -3' miRNA: 3'- -CGgUGU-CUCUGUGaa--UGCGUAa-CGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 185014 | 0.66 | 0.998927 |
Target: 5'- aGUCGCGcguuGGGACACUgg-GCGUUGuuGa -3' miRNA: 3'- -CGGUGU----CUCUGUGAaugCGUAACggC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 139960 | 0.74 | 0.878221 |
Target: 5'- cCCACGGGGACG--UGCGUucgUGCCGg -3' miRNA: 3'- cGGUGUCUCUGUgaAUGCGua-ACGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 98545 | 0.73 | 0.892149 |
Target: 5'- aGCaCACGGAGGCGC--ACGCGaUGCUGc -3' miRNA: 3'- -CG-GUGUCUCUGUGaaUGCGUaACGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 133761 | 0.73 | 0.905152 |
Target: 5'- gGCCAUGGAGcuGCACUcACGCg--GCCGu -3' miRNA: 3'- -CGGUGUCUC--UGUGAaUGCGuaaCGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 2028 | 0.71 | 0.951766 |
Target: 5'- cGCCgGCGGGGACGCgccgUGCGCGauggcaggaGCCGu -3' miRNA: 3'- -CGG-UGUCUCUGUGa---AUGCGUaa-------CGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 82785 | 0.71 | 0.959505 |
Target: 5'- gGCCACcGAGACACacccgcugGCGCAggaccUGCUGc -3' miRNA: 3'- -CGGUGuCUCUGUGaa------UGCGUa----ACGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 173191 | 0.69 | 0.985657 |
Target: 5'- gGCCACGGcgcGACAauugACGUAggGCCGc -3' miRNA: 3'- -CGGUGUCu--CUGUgaa-UGCGUaaCGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 105842 | 0.7 | 0.977498 |
Target: 5'- cGUCACAgccGAGGCgGCgcgGCGCAgcGCCGg -3' miRNA: 3'- -CGGUGU---CUCUG-UGaa-UGCGUaaCGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 153677 | 0.71 | 0.955751 |
Target: 5'- cGCCACAGAaACAgUUuuGCAgaucgUGCCGc -3' miRNA: 3'- -CGGUGUCUcUGUgAAugCGUa----ACGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 204037 | 0.77 | 0.719454 |
Target: 5'- cGCCGCAGAGACGug-GCGUAcugGCCGu -3' miRNA: 3'- -CGGUGUCUCUGUgaaUGCGUaa-CGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 173787 | 0.69 | 0.983871 |
Target: 5'- cGCCAuCAuGGACGCgcGCGCGgugGCCa -3' miRNA: 3'- -CGGU-GUcUCUGUGaaUGCGUaa-CGGc -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 38597 | 0.76 | 0.801637 |
Target: 5'- aGCCGCAGcacAGACGCUgguucaggugccgACGCAcgGCCGu -3' miRNA: 3'- -CGGUGUC---UCUGUGAa------------UGCGUaaCGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 190951 | 0.71 | 0.951766 |
Target: 5'- gGCCGCGGAaACACUgcCGCAUgcGCUGc -3' miRNA: 3'- -CGGUGUCUcUGUGAauGCGUAa-CGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 82840 | 0.69 | 0.985138 |
Target: 5'- uGCUGCAGguggccgagcgccuGGGCGCcgUGCGCAUaGCCa -3' miRNA: 3'- -CGGUGUC--------------UCUGUGa-AUGCGUAaCGGc -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 2340 | 0.68 | 0.992429 |
Target: 5'- gGCgGCGGAGcugucGCACUUucugcGCGCGggcgUGCUGg -3' miRNA: 3'- -CGgUGUCUC-----UGUGAA-----UGCGUa---ACGGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 16444 | 0.75 | 0.822764 |
Target: 5'- cGUCACGGucauGACACcgACGCGUUGgCCGc -3' miRNA: 3'- -CGGUGUCu---CUGUGaaUGCGUAAC-GGC- -5' |
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29919 | 5' | -50.9 | NC_006273.1 | + | 193362 | 0.73 | 0.892149 |
Target: 5'- cGCCuccCGGAGGCuCUUugGCuccagUGCCGa -3' miRNA: 3'- -CGGu--GUCUCUGuGAAugCGua---ACGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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