Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 109348 | 1.08 | 0.000443 |
Target: 5'- aUCGCGCCCGCGCUCUCCCGGGCUCCAu -3' miRNA: 3'- -AGCGCGGGCGCGAGAGGGCCCGAGGU- -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 10653 | 0.75 | 0.113588 |
Target: 5'- aCGCGCCCGaucgcgcgaGCUC-CCCGGGUUCg- -3' miRNA: 3'- aGCGCGGGCg--------CGAGaGGGCCCGAGgu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 126207 | 0.75 | 0.113588 |
Target: 5'- aCGCGCCCGaucgcgcgaGCUC-CCCGGGUUCg- -3' miRNA: 3'- aGCGCGGGCg--------CGAGaGGGCCCGAGgu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 38556 | 0.75 | 0.119347 |
Target: 5'- gCGCGCCuuCGUGCUcCUCCCGGuGgUCCAu -3' miRNA: 3'- aGCGCGG--GCGCGA-GAGGGCC-CgAGGU- -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 128648 | 0.73 | 0.155014 |
Target: 5'- -aGCGCCCGCGCgaaUaccucauccucgucCUCCCGGGgUCCc -3' miRNA: 3'- agCGCGGGCGCG---A--------------GAGGGCCCgAGGu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 13094 | 0.73 | 0.155014 |
Target: 5'- -aGCGCCCGCGCgaaUaccucauccucgucCUCCCGGGgUCCc -3' miRNA: 3'- agCGCGGGCGCG---A--------------GAGGGCCCgAGGu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 89638 | 0.73 | 0.159954 |
Target: 5'- gUCGCGCacggCgGCGUUCUCuaGGGCUCCc -3' miRNA: 3'- -AGCGCG----GgCGCGAGAGggCCCGAGGu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 62462 | 0.73 | 0.159954 |
Target: 5'- cCGUGCCCGUGCccguggccggCUCCCgcGGGCUUCGc -3' miRNA: 3'- aGCGCGGGCGCGa---------GAGGG--CCCGAGGU- -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 29181 | 0.71 | 0.22221 |
Target: 5'- cUCGCGCuucaggaCCGCGUguugCUCUCGGGCaucggCCAa -3' miRNA: 3'- -AGCGCG-------GGCGCGa---GAGGGCCCGa----GGU- -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 125516 | 0.69 | 0.279515 |
Target: 5'- aUGCGCCCGCGCcgagcucgacgUC-CCCGcGGUUCgAg -3' miRNA: 3'- aGCGCGGGCGCG-----------AGaGGGC-CCGAGgU- -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 9962 | 0.69 | 0.279515 |
Target: 5'- aUGCGCCCGCGCcgagcucgacgUC-CCCGcGGUUCgAg -3' miRNA: 3'- aGCGCGGGCGCG-----------AGaGGGC-CCGAGgU- -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 110836 | 0.69 | 0.305268 |
Target: 5'- aUCGaGUgCGCGCUCgaCCCGGGUUCg- -3' miRNA: 3'- -AGCgCGgGCGCGAGa-GGGCCCGAGgu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 93669 | 0.68 | 0.318812 |
Target: 5'- gUCGCGCCCGCcgaUUUaccCCCGGG-UCCGu -3' miRNA: 3'- -AGCGCGGGCGcg-AGA---GGGCCCgAGGU- -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 84296 | 0.68 | 0.354622 |
Target: 5'- aCGC-CCCGCGaaaCUC-CCCGGcCUCCAu -3' miRNA: 3'- aGCGcGGGCGC---GAGaGGGCCcGAGGU- -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 130626 | 0.67 | 0.36972 |
Target: 5'- cUCGgGCCCGCacccgcaccGCUCccUCCgGGGCcCCu -3' miRNA: 3'- -AGCgCGGGCG---------CGAG--AGGgCCCGaGGu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 15072 | 0.67 | 0.36972 |
Target: 5'- cUCGgGCCCGCacccgcaccGCUCccUCCgGGGCcCCu -3' miRNA: 3'- -AGCgCGGGCG---------CGAG--AGGgCCCGaGGu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 82217 | 0.67 | 0.36972 |
Target: 5'- gUCGCagaaucuccggaGUuuGCGCUCaCCCGGGuCUCUg -3' miRNA: 3'- -AGCG------------CGggCGCGAGaGGGCCC-GAGGu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 39355 | 0.67 | 0.376656 |
Target: 5'- cUC-CGUCCGCGCUCuaccggcggucguUCCCGGGUcgggucucuuucUCCc -3' miRNA: 3'- -AGcGCGGGCGCGAG-------------AGGGCCCG------------AGGu -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 130711 | 0.67 | 0.384465 |
Target: 5'- cUCGCGCUUuCGCaUUCCCGGauauuucGCUCCGg -3' miRNA: 3'- -AGCGCGGGcGCGaGAGGGCC-------CGAGGU- -5' |
|||||||
2992 | 3' | -65.7 | NC_001493.1 | + | 15156 | 0.67 | 0.393178 |
Target: 5'- cUCGCGCUUuCGCaUUCCCGgauauuucGGCUCCGg -3' miRNA: 3'- -AGCGCGGGcGCGaGAGGGC--------CCGAGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home