miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
2992	3'	-65.7	NC_001493.1	+	89638	0.73	0.159954
	Target:  5'- gUCGCGCacggCgGCGUUCUCuaGGGCUCCc -3' miRNA:   3'- -AGCGCG----GgCGCGAGAGggCCCGAGGu -5'
2992	3'	-65.7	NC_001493.1	+	13094	0.73	0.155014
	Target:  5'- -aGCGCCCGCGCgaaUaccucauccucgucCUCCCGGGgUCCc -3' miRNA:   3'- agCGCGGGCGCG---A--------------GAGGGCCCgAGGu -5'
2992	3'	-65.7	NC_001493.1	+	128648	0.73	0.155014
	Target:  5'- -aGCGCCCGCGCgaaUaccucauccucgucCUCCCGGGgUCCc -3' miRNA:   3'- agCGCGGGCGCG---A--------------GAGGGCCCgAGGu -5'
2992	3'	-65.7	NC_001493.1	+	38556	0.75	0.119347
	Target:  5'- gCGCGCCuuCGUGCUcCUCCCGGuGgUCCAu -3' miRNA:   3'- aGCGCGG--GCGCGA-GAGGGCC-CgAGGU- -5'
2992	3'	-65.7	NC_001493.1	+	10653	0.75	0.113588
	Target:  5'- aCGCGCCCGaucgcgcgaGCUC-CCCGGGUUCg- -3' miRNA:   3'- aGCGCGGGCg--------CGAGaGGGCCCGAGgu -5'
2992	3'	-65.7	NC_001493.1	+	126207	0.75	0.113588
	Target:  5'- aCGCGCCCGaucgcgcgaGCUC-CCCGGGUUCg- -3' miRNA:   3'- aGCGCGGGCg--------CGAGaGGGCCCGAGgu -5'
2992	3'	-65.7	NC_001493.1	+	109348	1.08	0.000443
	Target:  5'- aUCGCGCCCGCGCUCUCCCGGGCUCCAu -3' miRNA:   3'- -AGCGCGGGCGCGAGAGGGCCCGAGGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home