Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2992 | 5' | -52.9 | NC_001493.1 | + | 109311 | 1.08 | 0.005509 |
Target: 5'- cACCGGAGACUGAAUUCACCGGUCUCAu -3' miRNA: 3'- -UGGCCUCUGACUUAAGUGGCCAGAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 41688 | 0.84 | 0.203618 |
Target: 5'- aACCGGAGACcGggUccUCACCuGGUCUCAc -3' miRNA: 3'- -UGGCCUCUGaCuuA--AGUGG-CCAGAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 8433 | 0.71 | 0.781584 |
Target: 5'- cGCCGGGGcucccacccaucgguGCUGGAg-CGCgGGUCUCAg -3' miRNA: 3'- -UGGCCUC---------------UGACUUaaGUGgCCAGAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 123987 | 0.71 | 0.781584 |
Target: 5'- cGCCGGGGcucccacccaucgguGCUGGAg-CGCgGGUCUCAg -3' miRNA: 3'- -UGGCCUC---------------UGACUUaaGUGgCCAGAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 6134 | 0.71 | 0.814811 |
Target: 5'- uCCGGAGAa-GAGUUCACCGGg---- -3' miRNA: 3'- uGGCCUCUgaCUUAAGUGGCCagagu -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 121688 | 0.71 | 0.814811 |
Target: 5'- uCCGGAGAa-GAGUUCACCGGg---- -3' miRNA: 3'- uGGCCUCUgaCUUAAGUGGCCagagu -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 85944 | 0.69 | 0.894057 |
Target: 5'- -aCGGAGACg-----CACCGGaUCUCAa -3' miRNA: 3'- ugGCCUCUGacuuaaGUGGCC-AGAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 71402 | 0.68 | 0.919298 |
Target: 5'- aACUGGAGAUgg---UCGCCGGUCc-- -3' miRNA: 3'- -UGGCCUCUGacuuaAGUGGCCAGagu -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 119228 | 0.67 | 0.954216 |
Target: 5'- -aCGGGGAUcccgaacggaaggggGAGUUCACCGccGUCUCGa -3' miRNA: 3'- ugGCCUCUGa--------------CUUAAGUGGC--CAGAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 3674 | 0.67 | 0.954216 |
Target: 5'- -aCGGGGAUcccgaacggaaggggGAGUUCACCGccGUCUCGa -3' miRNA: 3'- ugGCCUCUGa--------------CUUAAGUGGC--CAGAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 123383 | 0.66 | 0.96146 |
Target: 5'- cCCGGGGGgaGggUuaaucggggaggUCACCGGgagaCUCGa -3' miRNA: 3'- uGGCCUCUgaCuuA------------AGUGGCCa---GAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 7829 | 0.66 | 0.96146 |
Target: 5'- cCCGGGGGgaGggUuaaucggggaggUCACCGGgagaCUCGa -3' miRNA: 3'- uGGCCUCUgaCuuA------------AGUGGCCa---GAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 10582 | 0.66 | 0.971213 |
Target: 5'- gACCGG-GGCUGugccCACaCGGUCUg- -3' miRNA: 3'- -UGGCCuCUGACuuaaGUG-GCCAGAgu -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 126137 | 0.66 | 0.971213 |
Target: 5'- gACCGG-GGCUGugccCACaCGGUCUg- -3' miRNA: 3'- -UGGCCuCUGACuuaaGUG-GCCAGAgu -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 58459 | 0.66 | 0.971213 |
Target: 5'- cCCGGAGACgcgGAAUgaacuCCGGcaCUCGa -3' miRNA: 3'- uGGCCUCUGa--CUUAagu--GGCCa-GAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 64408 | 0.66 | 0.971213 |
Target: 5'- gGCCGGAGACcGAGcUCAUcacgacaaCGGUggCUCGg -3' miRNA: 3'- -UGGCCUCUGaCUUaAGUG--------GCCA--GAGU- -5' |
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2992 | 5' | -52.9 | NC_001493.1 | + | 88052 | 0.65 | 0.973483 |
Target: 5'- aACCGG-GAacauac-CGCCGGUCUCGa -3' miRNA: 3'- -UGGCCuCUgacuuaaGUGGCCAGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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