miRNA display CGI


Results 1 - 20 of 373 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29920 3' -55.7 NC_006273.1 + 70232 0.66 0.976962
Target:  5'- --aGAUGGUGAcCGAgggguacacgcAACCGCaGCUCCc -3'
miRNA:   3'- cugCUGCCGCU-GCU-----------UUGGUGgCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 162726 0.66 0.976962
Target:  5'- uGGCGGCGGCGgcaagaACGAGACggaGCaGCagUCCg -3'
miRNA:   3'- -CUGCUGCCGC------UGCUUUGg--UGgCG--AGG- -5'
29920 3' -55.7 NC_006273.1 + 233592 0.66 0.976962
Target:  5'- uGACGACaGGuUGGCGGc-CCAUgGUUCCg -3'
miRNA:   3'- -CUGCUG-CC-GCUGCUuuGGUGgCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 145779 0.66 0.976962
Target:  5'- aACGACaguaguaGCGGC--AGCCACCGCgaggCCa -3'
miRNA:   3'- cUGCUGc------CGCUGcuUUGGUGGCGa---GG- -5'
29920 3' -55.7 NC_006273.1 + 201527 0.66 0.976962
Target:  5'- aGACGcUGGuCGACGAcuACUuuCUGCUCCc -3'
miRNA:   3'- -CUGCuGCC-GCUGCUu-UGGu-GGCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 118893 0.66 0.976962
Target:  5'- gGAUGACGaGCG-UGAGAgCCccguuguuACCGCUUCg -3'
miRNA:   3'- -CUGCUGC-CGCuGCUUU-GG--------UGGCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 99958 0.66 0.976962
Target:  5'- --aGACGaGCG-CGcAGCCGCUGC-CCa -3'
miRNA:   3'- cugCUGC-CGCuGCuUUGGUGGCGaGG- -5'
29920 3' -55.7 NC_006273.1 + 117228 0.66 0.976962
Target:  5'- cACGcCGGCGGCuGGGgCGCgCGUUCCc -3'
miRNA:   3'- cUGCuGCCGCUGcUUUgGUG-GCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 137023 0.66 0.976962
Target:  5'- gGACaGCGGCG-CGuuGCCACagCGUUUCg -3'
miRNA:   3'- -CUGcUGCCGCuGCuuUGGUG--GCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 152003 0.66 0.976962
Target:  5'- uGGCGGCGGCagcagcccGACGuggcCCGCgGgUCCu -3'
miRNA:   3'- -CUGCUGCCG--------CUGCuuu-GGUGgCgAGG- -5'
29920 3' -55.7 NC_006273.1 + 169755 0.66 0.976962
Target:  5'- aACGGCGGCaGCGucaGAGCCuucaacucCUGCUCUa -3'
miRNA:   3'- cUGCUGCCGcUGC---UUUGGu-------GGCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 131094 0.66 0.976962
Target:  5'- gGACGA-GGcCGA-GAcGCgGCCGCUCUa -3'
miRNA:   3'- -CUGCUgCC-GCUgCUuUGgUGGCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 141273 0.66 0.976962
Target:  5'- -uUGACGGUGAUGcGugUgGCCGCUCg -3'
miRNA:   3'- cuGCUGCCGCUGC-UuuGgUGGCGAGg -5'
29920 3' -55.7 NC_006273.1 + 31518 0.66 0.97673
Target:  5'- uGCaGCGGCucaACGAGaACCACCggggcauGCUCCg -3'
miRNA:   3'- cUGcUGCCGc--UGCUU-UGGUGG-------CGAGG- -5'
29920 3' -55.7 NC_006273.1 + 148100 0.66 0.97673
Target:  5'- aGCGAgCGGCccGCGAguuauuuGugCACCGaCUCCa -3'
miRNA:   3'- cUGCU-GCCGc-UGCU-------UugGUGGC-GAGG- -5'
29920 3' -55.7 NC_006273.1 + 82059 0.66 0.974556
Target:  5'- aGCGGCGGCagaagaggaGACGGAGgagugaacggUCGCCGUUgCCg -3'
miRNA:   3'- cUGCUGCCG---------CUGCUUU----------GGUGGCGA-GG- -5'
29920 3' -55.7 NC_006273.1 + 136105 0.66 0.974556
Target:  5'- -cCGugGGCGGCGAucgcGCUuuugACCGCg-- -3'
miRNA:   3'- cuGCugCCGCUGCUu---UGG----UGGCGagg -5'
29920 3' -55.7 NC_006273.1 + 79114 0.66 0.974556
Target:  5'- aGCGACGGCGuCGcucCCACCcggGUUUCu -3'
miRNA:   3'- cUGCUGCCGCuGCuuuGGUGG---CGAGG- -5'
29920 3' -55.7 NC_006273.1 + 179772 0.66 0.974556
Target:  5'- aGAcCGGCGGCGACGuGggUCGCgaGUUCa -3'
miRNA:   3'- -CU-GCUGCCGCUGC-UuuGGUGg-CGAGg -5'
29920 3' -55.7 NC_006273.1 + 85788 0.66 0.974556
Target:  5'- -cCGGCaGCGGCaucuAGACCGCCGCcacucgcguggUCCg -3'
miRNA:   3'- cuGCUGcCGCUGc---UUUGGUGGCG-----------AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.