miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29920 3' -55.7 NC_006273.1 + 185655 0.66 0.963091
Target:  5'- uGCGAaucuCGGCGuuCGGuguCCGCCGUUUCg -3'
miRNA:   3'- cUGCU----GCCGCu-GCUuu-GGUGGCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 31368 0.66 0.963091
Target:  5'- uGCGGCGGCugGACGAAgaGCUGCgGCaUCg -3'
miRNA:   3'- cUGCUGCCG--CUGCUU--UGGUGgCG-AGg -5'
29920 3' -55.7 NC_006273.1 + 147813 0.66 0.971971
Target:  5'- -gUGGCGGCcguGCcGAGCCGCgGCUUCa -3'
miRNA:   3'- cuGCUGCCGc--UGcUUUGGUGgCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 71645 0.66 0.966244
Target:  5'- gGACGA-GGagGACGucgcugcuAAACCGCCGCgcgCCu -3'
miRNA:   3'- -CUGCUgCCg-CUGC--------UUUGGUGGCGa--GG- -5'
29920 3' -55.7 NC_006273.1 + 132894 0.66 0.971702
Target:  5'- cGACGAaucuCGGCGGCGcgcGCCcuggugaACaCGUUCCg -3'
miRNA:   3'- -CUGCU----GCCGCUGCuu-UGG-------UG-GCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 101433 0.66 0.967152
Target:  5'- --aGGCGGCGccgacgguaucuuccGCGAGaugguauucgcugGCgGCUGCUCCg -3'
miRNA:   3'- cugCUGCCGC---------------UGCUU-------------UGgUGGCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 61232 0.66 0.971971
Target:  5'- aGGCGGCGGUGcagcagauGCGGgcccagguccAGCCACUGCagCg -3'
miRNA:   3'- -CUGCUGCCGC--------UGCU----------UUGGUGGCGagG- -5'
29920 3' -55.7 NC_006273.1 + 234493 0.66 0.966244
Target:  5'- gGGCG-CGGCGACau-GCCGuuGCgcugggCCa -3'
miRNA:   3'- -CUGCuGCCGCUGcuuUGGUggCGa-----GG- -5'
29920 3' -55.7 NC_006273.1 + 126948 0.66 0.966244
Target:  5'- -uCGGgGGUGACGccGCUugUGCUCUc -3'
miRNA:   3'- cuGCUgCCGCUGCuuUGGugGCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 58359 0.66 0.963091
Target:  5'- cGCGcUGGCGAUGGAgaGCCGCgGCaaCCg -3'
miRNA:   3'- cUGCuGCCGCUGCUU--UGGUGgCGa-GG- -5'
29920 3' -55.7 NC_006273.1 + 3444 0.66 0.963091
Target:  5'- cGGCGACGGaGAgGAGcguguCCGCCGC-Cg -3'
miRNA:   3'- -CUGCUGCCgCUgCUUu----GGUGGCGaGg -5'
29920 3' -55.7 NC_006273.1 + 64801 0.66 0.966244
Target:  5'- --aGACugGGCGACGAAguGCCgcGCCGC-CUg -3'
miRNA:   3'- cugCUG--CCGCUGCUU--UGG--UGGCGaGG- -5'
29920 3' -55.7 NC_006273.1 + 45037 0.66 0.969202
Target:  5'- cACGGCGGCGgccugcucgcACGGAccuauacuAUUACCGCcCCa -3'
miRNA:   3'- cUGCUGCCGC----------UGCUU--------UGGUGGCGaGG- -5'
29920 3' -55.7 NC_006273.1 + 145728 0.66 0.966244
Target:  5'- aACGAgGaGCGGCaacaGAAGCUGCgGCUCUg -3'
miRNA:   3'- cUGCUgC-CGCUG----CUUUGGUGgCGAGG- -5'
29920 3' -55.7 NC_006273.1 + 15739 0.66 0.966244
Target:  5'- uGGCGACGcUGGCGAAGCCACgUGgaCg -3'
miRNA:   3'- -CUGCUGCcGCUGCUUUGGUG-GCgaGg -5'
29920 3' -55.7 NC_006273.1 + 132804 0.66 0.969202
Target:  5'- aACGACGGCGGC---AgCACCgGCcCCa -3'
miRNA:   3'- cUGCUGCCGCUGcuuUgGUGG-CGaGG- -5'
29920 3' -55.7 NC_006273.1 + 134013 0.66 0.963091
Target:  5'- gGAUGAggcaGGCGAUGcgcacGGCCGCCGC-CUg -3'
miRNA:   3'- -CUGCUg---CCGCUGCu----UUGGUGGCGaGG- -5'
29920 3' -55.7 NC_006273.1 + 140784 0.66 0.963091
Target:  5'- uGACGcCGGCGACGAGgugcauuuGCCuuuaaagcCCGuCUCg -3'
miRNA:   3'- -CUGCuGCCGCUGCUU--------UGGu-------GGC-GAGg -5'
29920 3' -55.7 NC_006273.1 + 163911 0.66 0.969202
Target:  5'- aGCGAggaGGCuGCGAucGCCGCCGcCUCg -3'
miRNA:   3'- cUGCUg--CCGcUGCUu-UGGUGGC-GAGg -5'
29920 3' -55.7 NC_006273.1 + 8041 0.66 0.971971
Target:  5'- aGACG-CGGCGACGccucuCCACgGC-Cg -3'
miRNA:   3'- -CUGCuGCCGCUGCuuu--GGUGgCGaGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.