miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29920 5' -54.1 NC_006273.1 + 195176 0.66 0.987336
Target:  5'- aUGGggGgcGCcaaaaCGCCGUCGGacGCCGu -3'
miRNA:   3'- -AUCuuCauUGc----GUGGCAGCCa-CGGCc -5'
29920 5' -54.1 NC_006273.1 + 213114 0.66 0.987336
Target:  5'- cAGAug-AGCGCACCGacggCGGaGCCGc -3'
miRNA:   3'- aUCUucaUUGCGUGGCa---GCCaCGGCc -5'
29920 5' -54.1 NC_006273.1 + 40908 0.66 0.987336
Target:  5'- -cGgcGUcGACGCACCGUCuGcGCuCGGg -3'
miRNA:   3'- auCuuCA-UUGCGUGGCAGcCaCG-GCC- -5'
29920 5' -54.1 NC_006273.1 + 22259 0.66 0.985758
Target:  5'- cGGcGAGcGACGCggcuccGCCGUCGGUGCg-- -3'
miRNA:   3'- aUC-UUCaUUGCG------UGGCAGCCACGgcc -5'
29920 5' -54.1 NC_006273.1 + 143419 0.66 0.985758
Target:  5'- uUGGAGGUcACaaaCACCGUaCGGUGUuuuCGGg -3'
miRNA:   3'- -AUCUUCAuUGc--GUGGCA-GCCACG---GCC- -5'
29920 5' -54.1 NC_006273.1 + 144764 0.66 0.984741
Target:  5'- cGGAGGcacGACGCggcggccguggccucGCUGUugcagucacaccCGGUGCCGGg -3'
miRNA:   3'- aUCUUCa--UUGCG---------------UGGCA------------GCCACGGCC- -5'
29920 5' -54.1 NC_006273.1 + 139232 0.66 0.984032
Target:  5'- gUAGGAGgcGCGCugCuccUCGGaGCaCGGg -3'
miRNA:   3'- -AUCUUCauUGCGugGc--AGCCaCG-GCC- -5'
29920 5' -54.1 NC_006273.1 + 132839 0.66 0.982153
Target:  5'- uUGGccGGGUAccaGCGUGCUGUgGGcGCCGGa -3'
miRNA:   3'- -AUC--UUCAU---UGCGUGGCAgCCaCGGCC- -5'
29920 5' -54.1 NC_006273.1 + 177130 0.66 0.982153
Target:  5'- -cGAGGUGGCGCAuCUGUgGGgcgugacGCCGu -3'
miRNA:   3'- auCUUCAUUGCGU-GGCAgCCa------CGGCc -5'
29920 5' -54.1 NC_006273.1 + 93503 0.66 0.982153
Target:  5'- aAGuGGUGACGcCGCCGcCGGccucGUCGGu -3'
miRNA:   3'- aUCuUCAUUGC-GUGGCaGCCa---CGGCC- -5'
29920 5' -54.1 NC_006273.1 + 119324 0.66 0.982153
Target:  5'- cGGAGGgugauuCGCACaCGaUCGGguagcggGCCGGc -3'
miRNA:   3'- aUCUUCauu---GCGUG-GC-AGCCa------CGGCC- -5'
29920 5' -54.1 NC_006273.1 + 167155 0.66 0.982153
Target:  5'- --uAGGUGGCGUugccGCCGUUGGUGgCCa- -3'
miRNA:   3'- aucUUCAUUGCG----UGGCAGCCAC-GGcc -5'
29920 5' -54.1 NC_006273.1 + 113736 0.66 0.982153
Target:  5'- cGGAGGUGGCGaCGgCGgCGGcGCCGu -3'
miRNA:   3'- aUCUUCAUUGC-GUgGCaGCCaCGGCc -5'
29920 5' -54.1 NC_006273.1 + 188907 0.66 0.982153
Target:  5'- gGGAAGggccugGGCGuCACCGgCGGUGUCc- -3'
miRNA:   3'- aUCUUCa-----UUGC-GUGGCaGCCACGGcc -5'
29920 5' -54.1 NC_006273.1 + 145201 0.66 0.980113
Target:  5'- -cGAGGUAGCGCGCUuuUCacUGCCGGc -3'
miRNA:   3'- auCUUCAUUGCGUGGc-AGccACGGCC- -5'
29920 5' -54.1 NC_006273.1 + 140987 0.66 0.980113
Target:  5'- -cGAGGUccggAGCGgGCCGcgccCGGUGcCCGGc -3'
miRNA:   3'- auCUUCA----UUGCgUGGCa---GCCAC-GGCC- -5'
29920 5' -54.1 NC_006273.1 + 130374 0.67 0.977903
Target:  5'- -cGAAGUGACGUcggaguuuuuCgGUCGcGUGCUGGc -3'
miRNA:   3'- auCUUCAUUGCGu---------GgCAGC-CACGGCC- -5'
29920 5' -54.1 NC_006273.1 + 141121 0.67 0.977903
Target:  5'- cGGGAGcgGGCGCAgCGUgCGGaccgcagcacgGCCGGa -3'
miRNA:   3'- aUCUUCa-UUGCGUgGCA-GCCa----------CGGCC- -5'
29920 5' -54.1 NC_006273.1 + 64765 0.67 0.975518
Target:  5'- aAGAAGcuGCcCGCCGgcgggCGGcUGCCGGu -3'
miRNA:   3'- aUCUUCauUGcGUGGCa----GCC-ACGGCC- -5'
29920 5' -54.1 NC_006273.1 + 34419 0.67 0.975517
Target:  5'- cAGcGGUGGCGaaacCGCCGUguggaaaguccCGGUGCCGa -3'
miRNA:   3'- aUCuUCAUUGC----GUGGCA-----------GCCACGGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.