miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29921 3' -52.2 NC_006273.1 + 132674 0.66 0.995881
Target:  5'- uGGAAUGCGGuCAGUUGGGGAgUa--- -3'
miRNA:   3'- uCCUUGUGCC-GUCAAUCUCUgAccuc -5'
29921 3' -52.2 NC_006273.1 + 189845 0.66 0.995881
Target:  5'- cGGGuggcaucugcGGCAUGGCGGggGGAGACgcgucGGGc -3'
miRNA:   3'- -UCC----------UUGUGCCGUCaaUCUCUGa----CCUc -5'
29921 3' -52.2 NC_006273.1 + 89368 0.66 0.995209
Target:  5'- cGGGcCGCGGCAGUcgcuUAGccaccaccuGGACgGGGGg -3'
miRNA:   3'- uCCUuGUGCCGUCA----AUC---------UCUGaCCUC- -5'
29921 3' -52.2 NC_006273.1 + 226145 0.66 0.995209
Target:  5'- cAGGuGGCGCGGUAGUUGGcGAgCUuuaGGGGu -3'
miRNA:   3'- -UCC-UUGUGCCGUCAAUCuCU-GA---CCUC- -5'
29921 3' -52.2 NC_006273.1 + 40979 0.66 0.995209
Target:  5'- cGGGGACG-GGgGGUgugcGGGGACgGGGGg -3'
miRNA:   3'- -UCCUUGUgCCgUCAa---UCUCUGaCCUC- -5'
29921 3' -52.2 NC_006273.1 + 1041 0.66 0.995209
Target:  5'- cGGGGACG-GGgGGUgugcGGGGACgGGGGg -3'
miRNA:   3'- -UCCUUGUgCCgUCAa---UCUCUGaCCUC- -5'
29921 3' -52.2 NC_006273.1 + 156249 0.66 0.994452
Target:  5'- aGGGGGCuuaaacgaACGGCGGgUGGAGGCgcGGGu -3'
miRNA:   3'- -UCCUUG--------UGCCGUCaAUCUCUGa-CCUc -5'
29921 3' -52.2 NC_006273.1 + 4607 0.66 0.994206
Target:  5'- gGGGGugGCGGUAGUgguacugcugauggUAGucgGGAC-GGAGg -3'
miRNA:   3'- -UCCUugUGCCGUCA--------------AUC---UCUGaCCUC- -5'
29921 3' -52.2 NC_006273.1 + 171061 0.66 0.9936
Target:  5'- cGGAGuCGCGGCGGUUGG-GGCgccGAu -3'
miRNA:   3'- uCCUU-GUGCCGUCAAUCuCUGac-CUc -5'
29921 3' -52.2 NC_006273.1 + 48058 0.66 0.992646
Target:  5'- cGGGGucGCACGGCA-UUAGcuccgcGGAcCUGGAGc -3'
miRNA:   3'- -UCCU--UGUGCCGUcAAUC------UCU-GACCUC- -5'
29921 3' -52.2 NC_006273.1 + 51015 0.67 0.991583
Target:  5'- gGGGAAuCGCGGCAuuuuuGGGAUuuUGGAGu -3'
miRNA:   3'- -UCCUU-GUGCCGUcaau-CUCUG--ACCUC- -5'
29921 3' -52.2 NC_006273.1 + 33782 0.67 0.991583
Target:  5'- cAGGGccaGCACGGC-GUUGGAGGCcaGGu- -3'
miRNA:   3'- -UCCU---UGUGCCGuCAAUCUCUGa-CCuc -5'
29921 3' -52.2 NC_006273.1 + 234762 0.67 0.990402
Target:  5'- gAGGAACACGcGCAacagGGccgcGGACUGGGu -3'
miRNA:   3'- -UCCUUGUGC-CGUcaa-UC----UCUGACCUc -5'
29921 3' -52.2 NC_006273.1 + 39870 0.67 0.990402
Target:  5'- gAGGAACACGcGCAacagGGccgcGGACUGGGu -3'
miRNA:   3'- -UCCUUGUGC-CGUcaa-UC----UCUGACCUc -5'
29921 3' -52.2 NC_006273.1 + 223234 0.67 0.989094
Target:  5'- uGGGcAACACGGUGG-UAGAGaACUGcAGg -3'
miRNA:   3'- -UCC-UUGUGCCGUCaAUCUC-UGACcUC- -5'
29921 3' -52.2 NC_006273.1 + 30447 0.67 0.989094
Target:  5'- gAGGAcACGcCGGCGGaugaGGAGGC-GGAGg -3'
miRNA:   3'- -UCCU-UGU-GCCGUCaa--UCUCUGaCCUC- -5'
29921 3' -52.2 NC_006273.1 + 41046 0.67 0.988956
Target:  5'- cGGGAugGCgGGCuGUUgcgugccGGGGACgGGGGa -3'
miRNA:   3'- -UCCUugUG-CCGuCAA-------UCUCUGaCCUC- -5'
29921 3' -52.2 NC_006273.1 + 1108 0.67 0.988956
Target:  5'- cGGGAugGCgGGCuGUUgcgugccGGGGACgGGGGa -3'
miRNA:   3'- -UCCUugUG-CCGuCAA-------UCUCUGaCCUC- -5'
29921 3' -52.2 NC_006273.1 + 99850 0.67 0.987651
Target:  5'- gAGGAGCgGCGGCGGcgaucaUUGGAGAg-GGAu -3'
miRNA:   3'- -UCCUUG-UGCCGUC------AAUCUCUgaCCUc -5'
29921 3' -52.2 NC_006273.1 + 216224 0.67 0.986066
Target:  5'- cGGAGCGCGGCAcaUGGGcGGC-GGAa -3'
miRNA:   3'- uCCUUGUGCCGUcaAUCU-CUGaCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.