miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29921 5' -58.4 NC_006273.1 + 195863 0.66 0.901118
Target:  5'- cUCUCCUCCUucuucuugugugCCGAugggagcgacgucaaCaGCGGgcacUGGUGCg -3'
miRNA:   3'- aAGAGGAGGA------------GGCU---------------GaCGCC----ACCACG- -5'
29921 5' -58.4 NC_006273.1 + 196835 0.66 0.89865
Target:  5'- gUCgugCgaCCuUuuGACcGCGGUGGUGCc -3'
miRNA:   3'- aAGa--GgaGG-AggCUGaCGCCACCACG- -5'
29921 5' -58.4 NC_006273.1 + 156692 0.66 0.885798
Target:  5'- ---aCCgcgCCUCCGGCgGCGGUGcccGCg -3'
miRNA:   3'- aagaGGa--GGAGGCUGaCGCCACca-CG- -5'
29921 5' -58.4 NC_006273.1 + 45016 0.66 0.885798
Target:  5'- cUCUCCUcCCUCCGcggcccccACgGCGGcGGccUGCu -3'
miRNA:   3'- aAGAGGA-GGAGGC--------UGaCGCCaCC--ACG- -5'
29921 5' -58.4 NC_006273.1 + 89973 0.66 0.864972
Target:  5'- -gCUCCUUCUUgGGCUGCuugggcaccacGGgcaagcgGGUGCg -3'
miRNA:   3'- aaGAGGAGGAGgCUGACG-----------CCa------CCACG- -5'
29921 5' -58.4 NC_006273.1 + 8055 0.67 0.857635
Target:  5'- cUCUCCaCggCCGACugguUGUGGUGGUGa -3'
miRNA:   3'- aAGAGGaGgaGGCUG----ACGCCACCACg -5'
29921 5' -58.4 NC_006273.1 + 167323 0.67 0.850109
Target:  5'- -cCUCCaUCUUCUGuugacuGCUGCGGUaGcGUGCa -3'
miRNA:   3'- aaGAGG-AGGAGGC------UGACGCCA-C-CACG- -5'
29921 5' -58.4 NC_006273.1 + 227297 0.67 0.850109
Target:  5'- -gCUCCUCCUggGAUUGC--UGGUGCu -3'
miRNA:   3'- aaGAGGAGGAggCUGACGccACCACG- -5'
29921 5' -58.4 NC_006273.1 + 162342 0.67 0.826457
Target:  5'- aUCgUCCUCgUCUGcCgGUGGUGGUGg -3'
miRNA:   3'- aAG-AGGAGgAGGCuGaCGCCACCACg -5'
29921 5' -58.4 NC_006273.1 + 38399 0.68 0.809859
Target:  5'- --gUCCgucgCCgCCG-CUGCGGUGGcgGCa -3'
miRNA:   3'- aagAGGa---GGaGGCuGACGCCACCa-CG- -5'
29921 5' -58.4 NC_006273.1 + 208341 0.68 0.809859
Target:  5'- ---cCCUgCUCUGGaacgucGCGGUGGUGCu -3'
miRNA:   3'- aagaGGAgGAGGCUga----CGCCACCACG- -5'
29921 5' -58.4 NC_006273.1 + 139544 0.68 0.790914
Target:  5'- aUCUCCgcgCaacaugauggCGGCgGCGGUGGUGCg -3'
miRNA:   3'- aAGAGGa--Ggag-------GCUGaCGCCACCACG- -5'
29921 5' -58.4 NC_006273.1 + 971 0.68 0.784747
Target:  5'- cUCUCCUCCUucuucuugugugCCGAUggagcgacgucaacaGCGGgcacUGGUGCg -3'
miRNA:   3'- aAGAGGAGGA------------GGCUGa--------------CGCC----ACCACG- -5'
29921 5' -58.4 NC_006273.1 + 160592 0.69 0.747468
Target:  5'- aUCUCCagCCggagacaaCGGCgGCGGUGGUGg -3'
miRNA:   3'- aAGAGGa-GGag------GCUGaCGCCACCACg -5'
29921 5' -58.4 NC_006273.1 + 7990 0.69 0.725829
Target:  5'- -gCUCCUUCUUuuccccagguggugCGACUGaCGGUGGcgGCg -3'
miRNA:   3'- aaGAGGAGGAG--------------GCUGAC-GCCACCa-CG- -5'
29921 5' -58.4 NC_006273.1 + 215267 0.72 0.592038
Target:  5'- --aUCCUCUgCCGGCUGCGaUGGUGg -3'
miRNA:   3'- aagAGGAGGaGGCUGACGCcACCACg -5'
29921 5' -58.4 NC_006273.1 + 34917 0.72 0.562799
Target:  5'- -cCUgCUCCUCCGGCgcuggguuaGCGGUGGaggugGCg -3'
miRNA:   3'- aaGAgGAGGAGGCUGa--------CGCCACCa----CG- -5'
29921 5' -58.4 NC_006273.1 + 162186 0.73 0.524464
Target:  5'- -----aUCCUCCGGCggagGCGGUGGUuGCg -3'
miRNA:   3'- aagaggAGGAGGCUGa---CGCCACCA-CG- -5'
29921 5' -58.4 NC_006273.1 + 91670 0.73 0.487165
Target:  5'- --gUCCUCCUCgcaGAUuaUGCuGGUGGUGCg -3'
miRNA:   3'- aagAGGAGGAGg--CUG--ACG-CCACCACG- -5'
29921 5' -58.4 NC_006273.1 + 72232 1.08 0.002982
Target:  5'- aUUCUCCUCCUCCGACUGCGGUGGUGCc -3'
miRNA:   3'- -AAGAGGAGGAGGCUGACGCCACCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.