miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29922 3' -56.5 NC_006273.1 + 15694 0.66 0.942937
Target:  5'- cGACGCGCgaggGCGCagaGCGGGUGauuaccgcCCUGGUg -3'
miRNA:   3'- -CUGCGCG----UGUGga-CGCUCAU--------GGACUA- -5'
29922 3' -56.5 NC_006273.1 + 199685 0.66 0.942937
Target:  5'- cACGgGCACGCCUuuGcGUACCUGc- -3'
miRNA:   3'- cUGCgCGUGUGGAcgCuCAUGGACua -5'
29922 3' -56.5 NC_006273.1 + 75225 0.66 0.938359
Target:  5'- uGGCaCGCGCACCcGCGucaAGUACCUa-- -3'
miRNA:   3'- -CUGcGCGUGUGGaCGC---UCAUGGAcua -5'
29922 3' -56.5 NC_006273.1 + 174122 0.66 0.933553
Target:  5'- -cCGCGCGCGCC-GCGcugcAGUGgCUGGa -3'
miRNA:   3'- cuGCGCGUGUGGaCGC----UCAUgGACUa -5'
29922 3' -56.5 NC_006273.1 + 88596 0.66 0.933553
Target:  5'- gGGCGCcgGCACGCCUGCG-GUcuucaaGCCcuUGAc -3'
miRNA:   3'- -CUGCG--CGUGUGGACGCuCA------UGG--ACUa -5'
29922 3' -56.5 NC_006273.1 + 83570 0.66 0.928516
Target:  5'- cACGCGCuACGCCUcgcggcGCGAGgacuccaugaGCCUGGg -3'
miRNA:   3'- cUGCGCG-UGUGGA------CGCUCa---------UGGACUa -5'
29922 3' -56.5 NC_006273.1 + 37468 0.66 0.923248
Target:  5'- gGACGCGCACAa---CGGGaugACCUGGUg -3'
miRNA:   3'- -CUGCGCGUGUggacGCUCa--UGGACUA- -5'
29922 3' -56.5 NC_006273.1 + 153803 0.66 0.923248
Target:  5'- cGGC-CGC-CGCCUGCGAGgACCUc-- -3'
miRNA:   3'- -CUGcGCGuGUGGACGCUCaUGGAcua -5'
29922 3' -56.5 NC_006273.1 + 74184 0.66 0.922167
Target:  5'- aGACGUGguCGCCUGCGGGgaacacgaucuCCaGAUa -3'
miRNA:   3'- -CUGCGCguGUGGACGCUCau---------GGaCUA- -5'
29922 3' -56.5 NC_006273.1 + 119181 0.67 0.906067
Target:  5'- cGGCGCGCagcuGCACCUGgGGacGCUUGAUu -3'
miRNA:   3'- -CUGCGCG----UGUGGACgCUcaUGGACUA- -5'
29922 3' -56.5 NC_006273.1 + 103479 0.67 0.906067
Target:  5'- uGGCGCGC-CAgCUGCGuggaGGUGCCgaaGAa -3'
miRNA:   3'- -CUGCGCGuGUgGACGC----UCAUGGa--CUa -5'
29922 3' -56.5 NC_006273.1 + 71896 0.67 0.893479
Target:  5'- gGGCGCG-ACACCgGCGAcgGaACCUGAg -3'
miRNA:   3'- -CUGCGCgUGUGGaCGCU--CaUGGACUa -5'
29922 3' -56.5 NC_006273.1 + 65677 0.67 0.880009
Target:  5'- gGACGuUGCACGCg-GCGGGUACC-GAa -3'
miRNA:   3'- -CUGC-GCGUGUGgaCGCUCAUGGaCUa -5'
29922 3' -56.5 NC_006273.1 + 131624 0.68 0.865689
Target:  5'- cACGCGCGCGgUUGCucGAGUACCg--- -3'
miRNA:   3'- cUGCGCGUGUgGACG--CUCAUGGacua -5'
29922 3' -56.5 NC_006273.1 + 136953 0.68 0.858222
Target:  5'- gGGCGCGCAuCGCC-GuCGAGUACgugCUGAUu -3'
miRNA:   3'- -CUGCGCGU-GUGGaC-GCUCAUG---GACUA- -5'
29922 3' -56.5 NC_006273.1 + 118159 0.68 0.858222
Target:  5'- aACGCGCGCcccaGCCgccgGCGuGgcgGCCUGAc -3'
miRNA:   3'- cUGCGCGUG----UGGa---CGCuCa--UGGACUa -5'
29922 3' -56.5 NC_006273.1 + 121616 0.68 0.850558
Target:  5'- uGCGCGCACACCacgUGCcGcAGUGCCa--- -3'
miRNA:   3'- cUGCGCGUGUGG---ACG-C-UCAUGGacua -5'
29922 3' -56.5 NC_006273.1 + 141441 0.68 0.850558
Target:  5'- uGCGCaggGCGCGCCUcccGCGGGU-CCUGGc -3'
miRNA:   3'- cUGCG---CGUGUGGA---CGCUCAuGGACUa -5'
29922 3' -56.5 NC_006273.1 + 103859 0.69 0.834664
Target:  5'- aACGCGUugAUCUGCGuGUccACCUGc- -3'
miRNA:   3'- cUGCGCGugUGGACGCuCA--UGGACua -5'
29922 3' -56.5 NC_006273.1 + 163603 0.69 0.80951
Target:  5'- uGCGCGCGCugUcagacggGCGAGUACCg--- -3'
miRNA:   3'- cUGCGCGUGugGa------CGCUCAUGGacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.