miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29922 5' -51.3 NC_006273.1 + 103759 0.66 0.998404
Target:  5'- cGCGCc-GGUACUCGAGcaaccgcgcgCgUGCCagGCCg -3'
miRNA:   3'- -CGUGaaCCAUGAGUUCa---------GgACGG--UGG- -5'
29922 5' -51.3 NC_006273.1 + 61244 0.66 0.998404
Target:  5'- aGCAgaUGcGgGCcCAGGUCCaGCCACUg -3'
miRNA:   3'- -CGUgaAC-CaUGaGUUCAGGaCGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 96062 0.66 0.998285
Target:  5'- gGCACcgccucGGUACccccuggccgaggCGAGUCCgcgGUCGCCg -3'
miRNA:   3'- -CGUGaa----CCAUGa------------GUUCAGGa--CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 43246 0.66 0.998094
Target:  5'- gGCGCUUGGaGCUguAGccgCCUgggacuugucuaGCCGCUg -3'
miRNA:   3'- -CGUGAACCaUGAguUCa--GGA------------CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 121076 0.66 0.998094
Target:  5'- -----cGGUACUCAAG-CUUGCC-CUg -3'
miRNA:   3'- cgugaaCCAUGAGUUCaGGACGGuGG- -5'
29922 5' -51.3 NC_006273.1 + 42071 0.66 0.998094
Target:  5'- gGCGgUUGcUGCUgacguugcugCAGGUUCUGCUGCCu -3'
miRNA:   3'- -CGUgAACcAUGA----------GUUCAGGACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 187626 0.66 0.998094
Target:  5'- aGCGCUUGGgugUCAGGcccgUCUGCCGa- -3'
miRNA:   3'- -CGUGAACCaugAGUUCa---GGACGGUgg -5'
29922 5' -51.3 NC_006273.1 + 28425 0.66 0.997735
Target:  5'- cGCACcgUGGUAaUCcaggccuauGUCCUGUCAUCc -3'
miRNA:   3'- -CGUGa-ACCAUgAGuu-------CAGGACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 83818 0.66 0.997735
Target:  5'- gGCGucUGGUcacGCUCAGGgggCCgaagagGCCAUCg -3'
miRNA:   3'- -CGUgaACCA---UGAGUUCa--GGa-----CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 86626 0.66 0.997322
Target:  5'- gGC-CUcGGUACcgAAGaCCUGCCACUc -3'
miRNA:   3'- -CGuGAaCCAUGagUUCaGGACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 225880 0.66 0.997322
Target:  5'- cGCAUUguacgGGUACUUAuagcGGUCgUGCUugUc -3'
miRNA:   3'- -CGUGAa----CCAUGAGU----UCAGgACGGugG- -5'
29922 5' -51.3 NC_006273.1 + 152574 0.66 0.997322
Target:  5'- aGCGCcaGGUuaGCcugcagCAGGUCCUG-CGCCa -3'
miRNA:   3'- -CGUGaaCCA--UGa-----GUUCAGGACgGUGG- -5'
29922 5' -51.3 NC_006273.1 + 106643 0.66 0.997045
Target:  5'- cGCgACUauGUGCUCAAGUuccucacgcgucuggCCgaagcgGCCACCg -3'
miRNA:   3'- -CG-UGAacCAUGAGUUCA---------------GGa-----CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 164235 0.66 0.996847
Target:  5'- uGCGCggcgacgggUGGcaggACUUGAGUaCCaagUGCCGCCg -3'
miRNA:   3'- -CGUGa--------ACCa---UGAGUUCA-GG---ACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 169059 0.66 0.996847
Target:  5'- gGCGCUugUGGUGCUacuuuucacuccCGGGUgCaUGUCGCCc -3'
miRNA:   3'- -CGUGA--ACCAUGA------------GUUCAgG-ACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 21478 0.66 0.996847
Target:  5'- cGUGCUcagcUGGUgGCUCAug-CC-GCCACCg -3'
miRNA:   3'- -CGUGA----ACCA-UGAGUucaGGaCGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 130313 0.66 0.996847
Target:  5'- cGCGCUUuu--CUCAcAGUCCaUGuCCACCa -3'
miRNA:   3'- -CGUGAAccauGAGU-UCAGG-AC-GGUGG- -5'
29922 5' -51.3 NC_006273.1 + 219242 0.67 0.996305
Target:  5'- aGCAgUUGGUcgcgcaGCUCcggcauGGUgCUGCCggGCCg -3'
miRNA:   3'- -CGUgAACCA------UGAGu-----UCAgGACGG--UGG- -5'
29922 5' -51.3 NC_006273.1 + 147840 0.67 0.995689
Target:  5'- aCACguucgUGGUGCgc-GGUgaccgUCUGCCGCCg -3'
miRNA:   3'- cGUGa----ACCAUGaguUCA-----GGACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 8344 0.67 0.995624
Target:  5'- aCACUUGGUagggaucgcaacgGCUaGGGUCUgugcgGCCAUCg -3'
miRNA:   3'- cGUGAACCA-------------UGAgUUCAGGa----CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.