miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29922 5' -51.3 NC_006273.1 + 71138 1.14 0.006495
Target:  5'- gGCACUUGGUACUCAAGUCCUGCCACCc -3'
miRNA:   3'- -CGUGAACCAUGAGUUCAGGACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 58001 0.78 0.670175
Target:  5'- cGCAC-UGGUccacaaacacGCUCAGGUUCacgGCCGCCa -3'
miRNA:   3'- -CGUGaACCA----------UGAGUUCAGGa--CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 145136 0.76 0.769249
Target:  5'- cGCGCaaGGUGCUCAAGUUUcaagGCgCGCCg -3'
miRNA:   3'- -CGUGaaCCAUGAGUUCAGGa---CG-GUGG- -5'
29922 5' -51.3 NC_006273.1 + 181657 0.74 0.863792
Target:  5'- aGCGCUuuUGG-GCUCAcccaccugcAGUCCUGUUGCCu -3'
miRNA:   3'- -CGUGA--ACCaUGAGU---------UCAGGACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 146504 0.73 0.885564
Target:  5'- aGCGCcUGGUACUUGAca-CUGCCGCUa -3'
miRNA:   3'- -CGUGaACCAUGAGUUcagGACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 173310 0.72 0.921266
Target:  5'- gGCGCUcGGUcgacGCguuguuacuggcgaUCAAGUCCgccGCCGCCg -3'
miRNA:   3'- -CGUGAaCCA----UG--------------AGUUCAGGa--CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 168548 0.72 0.933479
Target:  5'- aGCACgu-GUACUCAguGGucUCCUGCgGCCu -3'
miRNA:   3'- -CGUGaacCAUGAGU--UC--AGGACGgUGG- -5'
29922 5' -51.3 NC_006273.1 + 118969 0.71 0.947504
Target:  5'- -gGCUUGGguguC-CGAGUCCUcGUCGCCg -3'
miRNA:   3'- cgUGAACCau--GaGUUCAGGA-CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 160188 0.71 0.947504
Target:  5'- aGCAgCUcaGUugUCAAGUCCgagUGCCACUg -3'
miRNA:   3'- -CGU-GAacCAugAGUUCAGG---ACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 96595 0.71 0.955677
Target:  5'- cGCAgUUuGUGCUCAaagaGGUCgaguuccgCUGCCGCCa -3'
miRNA:   3'- -CGUgAAcCAUGAGU----UCAG--------GACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 27481 0.71 0.955677
Target:  5'- aCACcUGGUGCUCcga-CCUGcCCGCCa -3'
miRNA:   3'- cGUGaACCAUGAGuucaGGAC-GGUGG- -5'
29922 5' -51.3 NC_006273.1 + 81934 0.7 0.95942
Target:  5'- aGCACcUGGaUGCUgGaAGUCUUGCCGgCg -3'
miRNA:   3'- -CGUGaACC-AUGAgU-UCAGGACGGUgG- -5'
29922 5' -51.3 NC_006273.1 + 13564 0.7 0.966241
Target:  5'- gGCGCaacgccgGGUGCUCAcccgccgggcGGcCCggGCCGCCg -3'
miRNA:   3'- -CGUGaa-----CCAUGAGU----------UCaGGa-CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 30955 0.7 0.97221
Target:  5'- aGCACggGGUACUCGug----GCCGCCu -3'
miRNA:   3'- -CGUGaaCCAUGAGUucaggaCGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 203284 0.7 0.97221
Target:  5'- aCACUUuuggGGUACaCAGG-CgUGCCACCg -3'
miRNA:   3'- cGUGAA----CCAUGaGUUCaGgACGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 183746 0.69 0.981802
Target:  5'- gGCGCaacgGGUGCU---GUCCgcGCCGCCg -3'
miRNA:   3'- -CGUGaa--CCAUGAguuCAGGa-CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 2568 0.69 0.981802
Target:  5'- -gGCUgaGGUGCUCAc--CCUaGCCACCa -3'
miRNA:   3'- cgUGAa-CCAUGAGUucaGGA-CGGUGG- -5'
29922 5' -51.3 NC_006273.1 + 57479 0.69 0.983753
Target:  5'- uGCGCcgUGGUGCU-GGGUCagUGCCAgCg -3'
miRNA:   3'- -CGUGa-ACCAUGAgUUCAGg-ACGGUgG- -5'
29922 5' -51.3 NC_006273.1 + 24587 0.68 0.987176
Target:  5'- gGCGCccgaGGUGCUCcuccuGGUgCCUGUgGCCu -3'
miRNA:   3'- -CGUGaa--CCAUGAGu----UCA-GGACGgUGG- -5'
29922 5' -51.3 NC_006273.1 + 180411 0.68 0.990015
Target:  5'- aCACUUGGUGCcCuuGUCCUuuaaaauaGCCAgCa -3'
miRNA:   3'- cGUGAACCAUGaGuuCAGGA--------CGGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.