miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29923 3' -48 NC_006273.1 + 131846 0.66 0.999705
Target:  5'- cGGCCUGGggCUgGCCG--GCUa -3'
miRNA:   3'- -UCGGACCuaGAgUGGCagUGAa -5'
29923 3' -48 NC_006273.1 + 139675 0.66 0.999705
Target:  5'- uGGCUugUGGGaCgggCGCCGUCACUc -3'
miRNA:   3'- -UCGG--ACCUaGa--GUGGCAGUGAa -5'
29923 3' -48 NC_006273.1 + 199931 0.66 0.999625
Target:  5'- cGCCUGGGcggCUCGCC--CGCUUg -3'
miRNA:   3'- uCGGACCUa--GAGUGGcaGUGAA- -5'
29923 3' -48 NC_006273.1 + 26491 0.66 0.999625
Target:  5'- cGCgCUGGAgCUCACCGacCACa- -3'
miRNA:   3'- uCG-GACCUaGAGUGGCa-GUGaa -5'
29923 3' -48 NC_006273.1 + 7854 0.66 0.999625
Target:  5'- cAGCgUGGGU---ACCGUCACUa -3'
miRNA:   3'- -UCGgACCUAgagUGGCAGUGAa -5'
29923 3' -48 NC_006273.1 + 190891 0.66 0.999408
Target:  5'- cGCgUGuGUCUCACCGcCGCUc -3'
miRNA:   3'- uCGgACcUAGAGUGGCaGUGAa -5'
29923 3' -48 NC_006273.1 + 31122 0.67 0.999089
Target:  5'- cGCCUGGcgagcgcgAUCUCACgCGUCGg-- -3'
miRNA:   3'- uCGGACC--------UAGAGUG-GCAGUgaa -5'
29923 3' -48 NC_006273.1 + 133396 0.67 0.999089
Target:  5'- aGGCCuUGGAUCcucCGCCGcCGCg- -3'
miRNA:   3'- -UCGG-ACCUAGa--GUGGCaGUGaa -5'
29923 3' -48 NC_006273.1 + 116633 0.67 0.998633
Target:  5'- uGCCUGGg---CugCGUCACUUc -3'
miRNA:   3'- uCGGACCuagaGugGCAGUGAA- -5'
29923 3' -48 NC_006273.1 + 32665 0.67 0.998633
Target:  5'- cGGUCaaGuUCUCACCGUCACg- -3'
miRNA:   3'- -UCGGacCuAGAGUGGCAGUGaa -5'
29923 3' -48 NC_006273.1 + 148667 0.67 0.998633
Target:  5'- cGGCCUGGAggUCugCG-CGCa- -3'
miRNA:   3'- -UCGGACCUagAGugGCaGUGaa -5'
29923 3' -48 NC_006273.1 + 131183 0.68 0.997596
Target:  5'- gAGUCUGGAccgcaUCGCCGUCAa-- -3'
miRNA:   3'- -UCGGACCUag---AGUGGCAGUgaa -5'
29923 3' -48 NC_006273.1 + 207801 0.68 0.997596
Target:  5'- uGGUaCUGGGUUguucCACCGUCACg- -3'
miRNA:   3'- -UCG-GACCUAGa---GUGGCAGUGaa -5'
29923 3' -48 NC_006273.1 + 73268 0.68 0.99713
Target:  5'- gAGCCUGGuggaaCUCAUCaGUCGCg- -3'
miRNA:   3'- -UCGGACCua---GAGUGG-CAGUGaa -5'
29923 3' -48 NC_006273.1 + 65911 0.69 0.993541
Target:  5'- cGGCCUGGAUCUgCAgCGcaugCACg- -3'
miRNA:   3'- -UCGGACCUAGA-GUgGCa---GUGaa -5'
29923 3' -48 NC_006273.1 + 41913 0.7 0.98861
Target:  5'- cGGCauuaUGGA-CUUGCCGUCGCUg -3'
miRNA:   3'- -UCGg---ACCUaGAGUGGCAGUGAa -5'
29923 3' -48 NC_006273.1 + 208231 0.7 0.988457
Target:  5'- cGCCucucucaUGGAUCcacugUCACCGUCGCg- -3'
miRNA:   3'- uCGG-------ACCUAG-----AGUGGCAGUGaa -5'
29923 3' -48 NC_006273.1 + 105432 0.7 0.985239
Target:  5'- cAGCCccagggacgcGGGUCUCACCGUCGg-- -3'
miRNA:   3'- -UCGGa---------CCUAGAGUGGCAGUgaa -5'
29923 3' -48 NC_006273.1 + 72886 0.72 0.963867
Target:  5'- gGGCCgGGA-CUCACCGUCGu-- -3'
miRNA:   3'- -UCGGaCCUaGAGUGGCAGUgaa -5'
29923 3' -48 NC_006273.1 + 148467 0.72 0.960163
Target:  5'- cGGCCUGGA-CUCACCuUUACg- -3'
miRNA:   3'- -UCGGACCUaGAGUGGcAGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.