miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29924 3' -61.4 NC_006273.1 + 64772 0.66 0.806239
Target:  5'- uGCC-CGCCGgcggGCGgCUGCCgGUcuacagacuGGGCg -3'
miRNA:   3'- -UGGcGCGGCa---CGCaGACGGgCA---------CUCG- -5'
29924 3' -61.4 NC_006273.1 + 94071 0.66 0.806239
Target:  5'- -gCGCGUCGUGCGcaUGCgCCGguauuuuuccacUGGGCg -3'
miRNA:   3'- ugGCGCGGCACGCagACG-GGC------------ACUCG- -5'
29924 3' -61.4 NC_006273.1 + 163495 0.66 0.806239
Target:  5'- uCCGuCGCCG-GUGUCgcGCCCGUu-GCc -3'
miRNA:   3'- uGGC-GCGGCaCGCAGa-CGGGCAcuCG- -5'
29924 3' -61.4 NC_006273.1 + 93320 0.66 0.806239
Target:  5'- aACCGuCGCCGcugGCGgcgCUGCCgcgagacgaCGUGgacGGCa -3'
miRNA:   3'- -UGGC-GCGGCa--CGCa--GACGG---------GCAC---UCG- -5'
29924 3' -61.4 NC_006273.1 + 197361 0.66 0.803751
Target:  5'- gGCCGCGCUGggacGCGcugcacCUGCacccgcgcgccgcgCUGUGGGCg -3'
miRNA:   3'- -UGGCGCGGCa---CGCa-----GACG--------------GGCACUCG- -5'
29924 3' -61.4 NC_006273.1 + 2468 0.66 0.803751
Target:  5'- gGCCGCGCUGggacGCGcugcacCUGCacccgcgcgccgcgCUGUGGGCg -3'
miRNA:   3'- -UGGCGCGGCa---CGCa-----GACG--------------GGCACUCG- -5'
29924 3' -61.4 NC_006273.1 + 98185 0.66 0.797899
Target:  5'- cGCuCGCGCUG-GCGaCgaGCUCGcUGAGCg -3'
miRNA:   3'- -UG-GCGCGGCaCGCaGa-CGGGC-ACUCG- -5'
29924 3' -61.4 NC_006273.1 + 186042 0.66 0.797899
Target:  5'- uUUGCGCCGUGCGggUGCaCgGUG-GUa -3'
miRNA:   3'- uGGCGCGGCACGCagACG-GgCACuCG- -5'
29924 3' -61.4 NC_006273.1 + 111962 0.66 0.797899
Target:  5'- uGCCGCGCgGUgGCgGUCaaGUCUG-GAGCg -3'
miRNA:   3'- -UGGCGCGgCA-CG-CAGa-CGGGCaCUCG- -5'
29924 3' -61.4 NC_006273.1 + 159248 0.66 0.797899
Target:  5'- gUCGCGCgaacuuagUGUGCGUaaGuUCCGUGAGUg -3'
miRNA:   3'- uGGCGCG--------GCACGCAgaC-GGGCACUCG- -5'
29924 3' -61.4 NC_006273.1 + 218943 0.66 0.797899
Target:  5'- -aCGCGUCG-GUGUCaUGaCCGUGAcGCa -3'
miRNA:   3'- ugGCGCGGCaCGCAG-ACgGGCACU-CG- -5'
29924 3' -61.4 NC_006273.1 + 202263 0.66 0.797899
Target:  5'- aGCCGCGgCGgcGCGUUauaaGCaCCGUGGGg -3'
miRNA:   3'- -UGGCGCgGCa-CGCAGa---CG-GGCACUCg -5'
29924 3' -61.4 NC_006273.1 + 161987 0.66 0.791983
Target:  5'- gACCGCagucuggGCCGUG-G-CUGCCCGcgcgcuuugcgacucUGGGCc -3'
miRNA:   3'- -UGGCG-------CGGCACgCaGACGGGC---------------ACUCG- -5'
29924 3' -61.4 NC_006273.1 + 177244 0.66 0.789428
Target:  5'- cACCGUggugcggagGCCGcUGCGcgUGCCCGUG-GUg -3'
miRNA:   3'- -UGGCG---------CGGC-ACGCagACGGGCACuCG- -5'
29924 3' -61.4 NC_006273.1 + 234093 0.66 0.789428
Target:  5'- aGCUGCGUgugCGUGcCGUCUGuguucCCCGUGuccGCc -3'
miRNA:   3'- -UGGCGCG---GCAC-GCAGAC-----GGGCACu--CG- -5'
29924 3' -61.4 NC_006273.1 + 194155 0.66 0.789428
Target:  5'- aGCUGCGUgugCGUGcCGUCUGuguucCCCGUGuccGCc -3'
miRNA:   3'- -UGGCGCG---GCAC-GCAGAC-----GGGCACu--CG- -5'
29924 3' -61.4 NC_006273.1 + 149696 0.66 0.789428
Target:  5'- -gCGCGCCGgugGCGacuggcUCUcGgCCGUGGGUc -3'
miRNA:   3'- ugGCGCGGCa--CGC------AGA-CgGGCACUCG- -5'
29924 3' -61.4 NC_006273.1 + 78419 0.66 0.789428
Target:  5'- cCCGcCGCCGUcaGCGUCgucGUCCGUGc-- -3'
miRNA:   3'- uGGC-GCGGCA--CGCAGa--CGGGCACucg -5'
29924 3' -61.4 NC_006273.1 + 169674 0.66 0.789428
Target:  5'- gACgGCGCCGUGgcCG-UUGCCgCGUuAGCg -3'
miRNA:   3'- -UGgCGCGGCAC--GCaGACGG-GCAcUCG- -5'
29924 3' -61.4 NC_006273.1 + 90308 0.66 0.789428
Target:  5'- cGCCGcCGCCagcgGCGUC-GCCCGcG-GCu -3'
miRNA:   3'- -UGGC-GCGGca--CGCAGaCGGGCaCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.