miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29924 5' -54.7 NC_006273.1 + 156525 0.66 0.97495
Target:  5'- -gGCCUGcgaguucgucaAGGGCGUCACGCg------ -3'
miRNA:   3'- cgCGGGC-----------UCCCGUAGUGCGagaaaau -5'
29924 5' -54.7 NC_006273.1 + 173946 0.66 0.97495
Target:  5'- cGUGCCCGAGGGC--CugGUa------ -3'
miRNA:   3'- -CGCGGGCUCCCGuaGugCGagaaaau -5'
29924 5' -54.7 NC_006273.1 + 130761 0.66 0.97495
Target:  5'- uGCGCuCCGAGGaCGUCGCgGCUa----- -3'
miRNA:   3'- -CGCG-GGCUCCcGUAGUG-CGAgaaaau -5'
29924 5' -54.7 NC_006273.1 + 162608 0.66 0.97495
Target:  5'- cCGCCCGAGcGGCugCACGCguugUUGg -3'
miRNA:   3'- cGCGGGCUC-CCGuaGUGCGagaaAAU- -5'
29924 5' -54.7 NC_006273.1 + 96151 0.66 0.97495
Target:  5'- cGUGCuCCGAGGaGCAgCGCGC-CUc--- -3'
miRNA:   3'- -CGCG-GGCUCC-CGUaGUGCGaGAaaau -5'
29924 5' -54.7 NC_006273.1 + 92541 0.66 0.972312
Target:  5'- gGUGCCCGguguuuuuauucGGGGCGUUGuCGCgUCUUg-- -3'
miRNA:   3'- -CGCGGGC------------UCCCGUAGU-GCG-AGAAaau -5'
29924 5' -54.7 NC_006273.1 + 125978 0.66 0.969479
Target:  5'- cGUGCaCCGuggcGGcGGCAUUGCGCUCg---- -3'
miRNA:   3'- -CGCG-GGC----UC-CCGUAGUGCGAGaaaau -5'
29924 5' -54.7 NC_006273.1 + 120946 0.66 0.966445
Target:  5'- gGCGCCgccgccggugaCGcGGGGCGUCuuACGCUCg---- -3'
miRNA:   3'- -CGCGG-----------GC-UCCCGUAG--UGCGAGaaaau -5'
29924 5' -54.7 NC_006273.1 + 18984 0.66 0.963204
Target:  5'- aGCGCCUG-GGGCcgCACGgaCc---- -3'
miRNA:   3'- -CGCGGGCuCCCGuaGUGCgaGaaaau -5'
29924 5' -54.7 NC_006273.1 + 220526 0.66 0.963204
Target:  5'- cGCGCCCuuAGGGUAUCGuCGCg------ -3'
miRNA:   3'- -CGCGGGc-UCCCGUAGU-GCGagaaaau -5'
29924 5' -54.7 NC_006273.1 + 149695 0.66 0.963204
Target:  5'- uGCGCgCCGGuGGCGaCugGCUCUc--- -3'
miRNA:   3'- -CGCG-GGCUcCCGUaGugCGAGAaaau -5'
29924 5' -54.7 NC_006273.1 + 138060 0.66 0.963204
Target:  5'- cGCGuCCCGAaGGCuaCACGCuuuUCUUUUAc -3'
miRNA:   3'- -CGC-GGGCUcCCGuaGUGCG---AGAAAAU- -5'
29924 5' -54.7 NC_006273.1 + 216389 0.66 0.962868
Target:  5'- cGCGCCCGuGGGCAguaggUCcgugcggccccagGCGCUgCUg--- -3'
miRNA:   3'- -CGCGGGCuCCCGU-----AG-------------UGCGA-GAaaau -5'
29924 5' -54.7 NC_006273.1 + 100079 0.67 0.959751
Target:  5'- gGCGCCCGAGG-CGUCGCa-------- -3'
miRNA:   3'- -CGCGGGCUCCcGUAGUGcgagaaaau -5'
29924 5' -54.7 NC_006273.1 + 75704 0.67 0.959751
Target:  5'- cGCGcCCCGuGcGGCGcucagCACGCUCa---- -3'
miRNA:   3'- -CGC-GGGCuC-CCGUa----GUGCGAGaaaau -5'
29924 5' -54.7 NC_006273.1 + 195479 0.67 0.956081
Target:  5'- gGCGUCCaccuagGAGGGUG-CGCGCUCg---- -3'
miRNA:   3'- -CGCGGG------CUCCCGUaGUGCGAGaaaau -5'
29924 5' -54.7 NC_006273.1 + 586 0.67 0.956081
Target:  5'- gGCGUCCaccuagGAGGGUG-CGCGCUCg---- -3'
miRNA:   3'- -CGCGGG------CUCCCGUaGUGCGAGaaaau -5'
29924 5' -54.7 NC_006273.1 + 136102 0.67 0.95219
Target:  5'- aCGCCgUGGGcGGCgAUCGCGCUUUUg-- -3'
miRNA:   3'- cGCGG-GCUC-CCG-UAGUGCGAGAAaau -5'
29924 5' -54.7 NC_006273.1 + 102110 0.67 0.95219
Target:  5'- uGCGCCCGAGacggcGGCAuccUCGgGCUUUc--- -3'
miRNA:   3'- -CGCGGGCUC-----CCGU---AGUgCGAGAaaau -5'
29924 5' -54.7 NC_006273.1 + 199470 0.67 0.95219
Target:  5'- cGCGCCaCGGcGGGUcgUugGCUCc---- -3'
miRNA:   3'- -CGCGG-GCU-CCCGuaGugCGAGaaaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.