miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29925 3' -59.7 NC_006273.1 + 163751 0.65 0.869059
Target:  5'- gACGUccuccucGUCCUCCC-CCCAcGGCCUg-- -3'
miRNA:   3'- -UGCG-------CAGGAGGGcGGGUcCUGGAaac -5'
29925 3' -59.7 NC_006273.1 + 21725 0.66 0.858307
Target:  5'- gGCGCGgcUCUUCUCGCCCuGGcgguagaucucagcuGCCUggGg -3'
miRNA:   3'- -UGCGC--AGGAGGGCGGGuCC---------------UGGAaaC- -5'
29925 3' -59.7 NC_006273.1 + 87280 0.66 0.850908
Target:  5'- aGCGCGUUCgacagcgcugugguuUCCaCGCCCAGuGCCggUGc -3'
miRNA:   3'- -UGCGCAGG---------------AGG-GCGGGUCcUGGaaAC- -5'
29925 3' -59.7 NC_006273.1 + 94402 0.66 0.840252
Target:  5'- gGCGCGg---CCCGCUCcGGACCUc-- -3'
miRNA:   3'- -UGCGCaggaGGGCGGGuCCUGGAaac -5'
29925 3' -59.7 NC_006273.1 + 202147 0.66 0.840252
Target:  5'- cCGcCGUCgUCgCCGcCCCGGGGCCc--- -3'
miRNA:   3'- uGC-GCAGgAG-GGC-GGGUCCUGGaaac -5'
29925 3' -59.7 NC_006273.1 + 86145 0.66 0.832435
Target:  5'- cAUGCGcUCCUcCCCGUCCAacGCCUUUu -3'
miRNA:   3'- -UGCGC-AGGA-GGGCGGGUccUGGAAAc -5'
29925 3' -59.7 NC_006273.1 + 91871 0.66 0.832435
Target:  5'- aGCGCGgcgCCaugCUCGCCCAGGAg----- -3'
miRNA:   3'- -UGCGCa--GGa--GGGCGGGUCCUggaaac -5'
29925 3' -59.7 NC_006273.1 + 94556 0.67 0.816315
Target:  5'- cCGC-UCCUCCCcgggcuccgGCCCGGGAUCc--- -3'
miRNA:   3'- uGCGcAGGAGGG---------CGGGUCCUGGaaac -5'
29925 3' -59.7 NC_006273.1 + 137359 0.67 0.816315
Target:  5'- gGCGCGUUgUCCuCGCaCCGGG--CUUUGg -3'
miRNA:   3'- -UGCGCAGgAGG-GCG-GGUCCugGAAAC- -5'
29925 3' -59.7 NC_006273.1 + 141448 0.67 0.808026
Target:  5'- gGCGCG-CCUCCCGC--GGGuCCUg-- -3'
miRNA:   3'- -UGCGCaGGAGGGCGggUCCuGGAaac -5'
29925 3' -59.7 NC_006273.1 + 17690 0.67 0.808026
Target:  5'- gGCGCGUCC-CaCC-CCCuGGGCCa--- -3'
miRNA:   3'- -UGCGCAGGaG-GGcGGGuCCUGGaaac -5'
29925 3' -59.7 NC_006273.1 + 156857 0.67 0.799594
Target:  5'- uGCGCGcCCaUCCGUcgCCGGGACCg--- -3'
miRNA:   3'- -UGCGCaGGaGGGCG--GGUCCUGGaaac -5'
29925 3' -59.7 NC_006273.1 + 912 0.68 0.77705
Target:  5'- cCGCGcCC-CCCGCCCcucggucgcggccgcGGGGCCg--- -3'
miRNA:   3'- uGCGCaGGaGGGCGGG---------------UCCUGGaaac -5'
29925 3' -59.7 NC_006273.1 + 195804 0.68 0.77705
Target:  5'- cCGCGcCC-CCCGCCCcucggucgcggccgcGGGGCCg--- -3'
miRNA:   3'- uGCGCaGGaGGGCGGG---------------UCCUGGaaac -5'
29925 3' -59.7 NC_006273.1 + 170318 0.68 0.7464
Target:  5'- uAUGUG-CCUCUCGCCauCAGGGCCa--- -3'
miRNA:   3'- -UGCGCaGGAGGGCGG--GUCCUGGaaac -5'
29925 3' -59.7 NC_006273.1 + 105165 0.69 0.718481
Target:  5'- uGCGCGgcgCCgcggCCuCGCCCAGGuaGCCg--- -3'
miRNA:   3'- -UGCGCa--GGa---GG-GCGGGUCC--UGGaaac -5'
29925 3' -59.7 NC_006273.1 + 76615 0.69 0.709032
Target:  5'- uACGCGUCCguggCCgCGgCCGGcGGCCUcUUGu -3'
miRNA:   3'- -UGCGCAGGa---GG-GCgGGUC-CUGGA-AAC- -5'
29925 3' -59.7 NC_006273.1 + 52720 0.69 0.689963
Target:  5'- cCGUGUCCUCCCGCUCuGuGuCCUc-- -3'
miRNA:   3'- uGCGCAGGAGGGCGGGuC-CuGGAaac -5'
29925 3' -59.7 NC_006273.1 + 173934 0.7 0.612549
Target:  5'- gGCGCGuuUCUUCgUGCCCgAGGGCCUg-- -3'
miRNA:   3'- -UGCGC--AGGAGgGCGGG-UCCUGGAaac -5'
29925 3' -59.7 NC_006273.1 + 135553 0.71 0.593192
Target:  5'- cCGC-UCCUCCCGCCCAGccACCg--- -3'
miRNA:   3'- uGCGcAGGAGGGCGGGUCc-UGGaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.