miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29926 3' -56.8 NC_006273.1 + 145619 0.66 0.949823
Target:  5'- gUCUGGGCgGCggUCGU--GGUGGUGg -3'
miRNA:   3'- -AGACCUGaCGuaGGCAggCCACCACg -5'
29926 3' -56.8 NC_006273.1 + 143355 0.66 0.949823
Target:  5'- gUUGGACcgGCG-CgGUCUGGacgaGGUGCg -3'
miRNA:   3'- aGACCUGa-CGUaGgCAGGCCa---CCACG- -5'
29926 3' -56.8 NC_006273.1 + 121038 0.66 0.949823
Target:  5'- cCUGGGCgGCAcccucgUCGUgCCGGUcccaGGUGUg -3'
miRNA:   3'- aGACCUGaCGUa-----GGCA-GGCCA----CCACG- -5'
29926 3' -56.8 NC_006273.1 + 21452 0.66 0.945694
Target:  5'- aCUGGcCcgagaucgUGCGUUCG-CUGGUGGUGg -3'
miRNA:   3'- aGACCuG--------ACGUAGGCaGGCCACCACg -5'
29926 3' -56.8 NC_006273.1 + 73115 0.66 0.940902
Target:  5'- gCUGGAggaccgccgacguCUGCG-CCGcaaacugcgCCGGUGGcUGCg -3'
miRNA:   3'- aGACCU-------------GACGUaGGCa--------GGCCACC-ACG- -5'
29926 3' -56.8 NC_006273.1 + 120577 0.66 0.936784
Target:  5'- --cGGGCaagGCGUCUugCCGGUGGcgGCg -3'
miRNA:   3'- agaCCUGa--CGUAGGcaGGCCACCa-CG- -5'
29926 3' -56.8 NC_006273.1 + 113262 0.67 0.910645
Target:  5'- gCUGGugcaAgaGCGUCUGUCgGGccaGGUGCg -3'
miRNA:   3'- aGACC----UgaCGUAGGCAGgCCa--CCACG- -5'
29926 3' -56.8 NC_006273.1 + 208346 0.67 0.904756
Target:  5'- cUCUGGAa------CGUCgCGGUGGUGCu -3'
miRNA:   3'- -AGACCUgacguagGCAG-GCCACCACG- -5'
29926 3' -56.8 NC_006273.1 + 142227 0.68 0.885798
Target:  5'- -gUGGACgcaaacgcccguUGCGUCCG-CCGuUGGUGUc -3'
miRNA:   3'- agACCUG------------ACGUAGGCaGGCcACCACG- -5'
29926 3' -56.8 NC_006273.1 + 134915 0.68 0.877686
Target:  5'- cCUGGGCUGCAUCCuGgaccaccaggaCGGcUGGgGCg -3'
miRNA:   3'- aGACCUGACGUAGG-Cag---------GCC-ACCaCG- -5'
29926 3' -56.8 NC_006273.1 + 170492 0.68 0.876997
Target:  5'- --cGGACacaUGUAgCCGUCCaggucgcacgucucGGUGGUGCc -3'
miRNA:   3'- agaCCUG---ACGUaGGCAGG--------------CCACCACG- -5'
29926 3' -56.8 NC_006273.1 + 70743 0.69 0.850109
Target:  5'- gCUGGAgcuauCUGUGUCCGcCCGagcaGGUGCg -3'
miRNA:   3'- aGACCU-----GACGUAGGCaGGCca--CCACG- -5'
29926 3' -56.8 NC_006273.1 + 187217 0.69 0.8424
Target:  5'- --cGGGCUGCGUCgccuucggugaCGU-CGGUGGUGg -3'
miRNA:   3'- agaCCUGACGUAG-----------GCAgGCCACCACg -5'
29926 3' -56.8 NC_006273.1 + 54938 0.7 0.801332
Target:  5'- -gUGGGCUGCA---GUCgGGUGGUGg -3'
miRNA:   3'- agACCUGACGUaggCAGgCCACCACg -5'
29926 3' -56.8 NC_006273.1 + 145393 0.7 0.801332
Target:  5'- aCUGGGCUGCGaguugCUGgCCGGcGGUcGCg -3'
miRNA:   3'- aGACCUGACGUa----GGCaGGCCaCCA-CG- -5'
29926 3' -56.8 NC_006273.1 + 162744 0.7 0.792664
Target:  5'- --cGaGACggaGCAgcaGUCCGGUGGUGCu -3'
miRNA:   3'- agaC-CUGa--CGUaggCAGGCCACCACG- -5'
29926 3' -56.8 NC_006273.1 + 174186 0.7 0.765885
Target:  5'- gCUGGGCUGCGUcaagaCCGUCuCGcUGG-GCa -3'
miRNA:   3'- aGACCUGACGUA-----GGCAG-GCcACCaCG- -5'
29926 3' -56.8 NC_006273.1 + 21254 0.71 0.717249
Target:  5'- cCUGGAgcgaguggggcaaCUGCuGUCuCGaugcgccUCCGGUGGUGCg -3'
miRNA:   3'- aGACCU-------------GACG-UAG-GC-------AGGCCACCACG- -5'
29926 3' -56.8 NC_006273.1 + 68535 1.11 0.003063
Target:  5'- uUCUGGACUGCAUCCGUCCGGUGGUGCc -3'
miRNA:   3'- -AGACCUGACGUAGGCAGGCCACCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.