miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29926 5' -52 NC_006273.1 + 197935 0.65 0.99782
Target:  5'- -gGUGCC-CGAGACGGGgggcagaugGCUAu -3'
miRNA:   3'- agCAUGGuGCUCUGCCCacaua----UGGU- -5'
29926 5' -52 NC_006273.1 + 106715 0.66 0.997589
Target:  5'- aCGUacACCACGAGcuCGGGg----GCCAa -3'
miRNA:   3'- aGCA--UGGUGCUCu-GCCCacauaUGGU- -5'
29926 5' -52 NC_006273.1 + 140771 0.66 0.997589
Target:  5'- cCGUuCCGCG--GCGGGUGg--ACCGg -3'
miRNA:   3'- aGCAuGGUGCucUGCCCACauaUGGU- -5'
29926 5' -52 NC_006273.1 + 164966 0.66 0.99716
Target:  5'- aCGUGCaCGcCGAGACacacGG-GUAUGCCGa -3'
miRNA:   3'- aGCAUG-GU-GCUCUGc---CCaCAUAUGGU- -5'
29926 5' -52 NC_006273.1 + 133631 0.66 0.99651
Target:  5'- gCGUGCCuagcugacccugaaACG-GAUGGcGUGUAUAUCGu -3'
miRNA:   3'- aGCAUGG--------------UGCuCUGCC-CACAUAUGGU- -5'
29926 5' -52 NC_006273.1 + 143668 0.66 0.996111
Target:  5'- cUGUugGCCACGAgcGACGGGcUGUAUuuauauaacGCCu -3'
miRNA:   3'- aGCA--UGGUGCU--CUGCCC-ACAUA---------UGGu -5'
29926 5' -52 NC_006273.1 + 15689 0.66 0.996111
Target:  5'- uUCGUcgACgCGCGAGggcgcagaGCGGGUGauUACCGc -3'
miRNA:   3'- -AGCA--UG-GUGCUC--------UGCCCACauAUGGU- -5'
29926 5' -52 NC_006273.1 + 137466 0.67 0.99396
Target:  5'- gCGUGuuUCACGAGAUGGcUG-AUGCCGa -3'
miRNA:   3'- aGCAU--GGUGCUCUGCCcACaUAUGGU- -5'
29926 5' -52 NC_006273.1 + 153699 0.67 0.99396
Target:  5'- aUCGUGCCGCGAGGCGucaUGUucgACg- -3'
miRNA:   3'- -AGCAUGGUGCUCUGCcc-ACAua-UGgu -5'
29926 5' -52 NC_006273.1 + 84053 0.67 0.99306
Target:  5'- aUGaGCCGCGAagcGGCGGGcgGaGUGCCAg -3'
miRNA:   3'- aGCaUGGUGCU---CUGCCCa-CaUAUGGU- -5'
29926 5' -52 NC_006273.1 + 2285 0.67 0.99306
Target:  5'- aCGUcCCugGuAGACGGG-GUAgggagaucUACCAg -3'
miRNA:   3'- aGCAuGGugC-UCUGCCCaCAU--------AUGGU- -5'
29926 5' -52 NC_006273.1 + 105544 0.67 0.99306
Target:  5'- aCGUGCCuCGGGAgGcGGUGaUGUcACCGa -3'
miRNA:   3'- aGCAUGGuGCUCUgC-CCAC-AUA-UGGU- -5'
29926 5' -52 NC_006273.1 + 1016 0.67 0.992056
Target:  5'- -gGUugCGCcgGGGACGGGggGUGUGCgGg -3'
miRNA:   3'- agCAugGUG--CUCUGCCCa-CAUAUGgU- -5'
29926 5' -52 NC_006273.1 + 40954 0.67 0.992056
Target:  5'- -gGUugCGCcgGGGACGGGggGUGUGCgGg -3'
miRNA:   3'- agCAugGUG--CUCUGCCCa-CAUAUGgU- -5'
29926 5' -52 NC_006273.1 + 65679 0.67 0.99094
Target:  5'- aCGUugCACGcGGCGGGU----ACCGa -3'
miRNA:   3'- aGCAugGUGCuCUGCCCAcauaUGGU- -5'
29926 5' -52 NC_006273.1 + 169147 0.68 0.989705
Target:  5'- cCGUGugACGAGACGGcGUGUGgacgaGCUAu -3'
miRNA:   3'- aGCAUggUGCUCUGCC-CACAUa----UGGU- -5'
29926 5' -52 NC_006273.1 + 134872 0.68 0.986842
Target:  5'- ---cGCCAggUGAGGCGGGaucgccGUGUGCCAa -3'
miRNA:   3'- agcaUGGU--GCUCUGCCCa-----CAUAUGGU- -5'
29926 5' -52 NC_006273.1 + 29264 0.68 0.985198
Target:  5'- cCGUGcCCACGccGAcacccCGGGUGUAcUACCAg -3'
miRNA:   3'- aGCAU-GGUGCu-CU-----GCCCACAU-AUGGU- -5'
29926 5' -52 NC_006273.1 + 22752 0.69 0.979323
Target:  5'- -gGUACCGCuGGGAUGGGUGUuuuUugUu -3'
miRNA:   3'- agCAUGGUG-CUCUGCCCACAu--AugGu -5'
29926 5' -52 NC_006273.1 + 178077 0.69 0.977024
Target:  5'- gUCGUACUcgggaucucugaGCGAGACGGGUuGcAUGgCAa -3'
miRNA:   3'- -AGCAUGG------------UGCUCUGCCCA-CaUAUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.