miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29927 3' -54.6 NC_006273.1 + 117955 0.66 0.983918
Target:  5'- cGCACcugccaCGG-UAGCACCUGgAGGAgCCg -3'
miRNA:   3'- -CGUGa-----GCCaGUCGUGGGCgUCUUaGG- -5'
29927 3' -54.6 NC_006273.1 + 155635 0.66 0.983918
Target:  5'- cGCGCuucgUCGaGUCGGCGCaggGCaAGAGUCUg -3'
miRNA:   3'- -CGUG----AGC-CAGUCGUGgg-CG-UCUUAGG- -5'
29927 3' -54.6 NC_006273.1 + 105460 0.66 0.983918
Target:  5'- gGCGCUacaaGGagUCGGCGCC-GCAGGAgacgcugCCu -3'
miRNA:   3'- -CGUGAg---CC--AGUCGUGGgCGUCUUa------GG- -5'
29927 3' -54.6 NC_006273.1 + 88006 0.66 0.983918
Target:  5'- aGCGCcgacaGGUCGuGCACCUcccccccgGCGGcGUCCg -3'
miRNA:   3'- -CGUGag---CCAGU-CGUGGG--------CGUCuUAGG- -5'
29927 3' -54.6 NC_006273.1 + 159895 0.66 0.983918
Target:  5'- cGCAggCGGccgaAGCGCCgGCGG-GUCCu -3'
miRNA:   3'- -CGUgaGCCag--UCGUGGgCGUCuUAGG- -5'
29927 3' -54.6 NC_006273.1 + 202050 0.66 0.982809
Target:  5'- cGCACgCGGcugccgcaguucagcUCGGCGCUCuCGGAcgCCg -3'
miRNA:   3'- -CGUGaGCC---------------AGUCGUGGGcGUCUuaGG- -5'
29927 3' -54.6 NC_006273.1 + 234772 0.66 0.982037
Target:  5'- aGCGCcgUGGaCAGCAagCCGCAGAAg-- -3'
miRNA:   3'- -CGUGa-GCCaGUCGUg-GGCGUCUUagg -5'
29927 3' -54.6 NC_006273.1 + 23672 0.66 0.982037
Target:  5'- cGCGCUCcGUgCGGCccccagagGCCCGCcgAGAuUCCc -3'
miRNA:   3'- -CGUGAGcCA-GUCG--------UGGGCG--UCUuAGG- -5'
29927 3' -54.6 NC_006273.1 + 198620 0.66 0.982037
Target:  5'- gGC-CUCGGcgugcUCAGgcCACCCGcCGGAGcCCg -3'
miRNA:   3'- -CGuGAGCC-----AGUC--GUGGGC-GUCUUaGG- -5'
29927 3' -54.6 NC_006273.1 + 103144 0.66 0.982037
Target:  5'- cGguCUCGGUCAGgGCCuCGUccgAGAAa-- -3'
miRNA:   3'- -CguGAGCCAGUCgUGG-GCG---UCUUagg -5'
29927 3' -54.6 NC_006273.1 + 185167 0.66 0.982037
Target:  5'- gGCAgCUCaa-CAGCACCCagaacagccacgGCAGAGUUCg -3'
miRNA:   3'- -CGU-GAGccaGUCGUGGG------------CGUCUUAGG- -5'
29927 3' -54.6 NC_006273.1 + 194834 0.66 0.982037
Target:  5'- aGCGCcgUGGaCAGCAagCCGCAGAAg-- -3'
miRNA:   3'- -CGUGa-GCCaGUCGUg-GGCGUCUUagg -5'
29927 3' -54.6 NC_006273.1 + 72460 0.66 0.982037
Target:  5'- cGCAC-C-GUCGGUGCCgGCGGccacGUCCg -3'
miRNA:   3'- -CGUGaGcCAGUCGUGGgCGUCu---UAGG- -5'
29927 3' -54.6 NC_006273.1 + 118492 0.66 0.979996
Target:  5'- cCACUCGGgaucGCGCCCGUAcacggCCa -3'
miRNA:   3'- cGUGAGCCagu-CGUGGGCGUcuua-GG- -5'
29927 3' -54.6 NC_006273.1 + 225772 0.66 0.979996
Target:  5'- -uGCUCGGUCuGCcUCUugGGAAUCCg -3'
miRNA:   3'- cgUGAGCCAGuCGuGGGcgUCUUAGG- -5'
29927 3' -54.6 NC_006273.1 + 234629 0.66 0.979996
Target:  5'- aGCGC-CGGacaCAGCACgCCGCaaacgcgcugaGGAcgCCg -3'
miRNA:   3'- -CGUGaGCCa--GUCGUG-GGCG-----------UCUuaGG- -5'
29927 3' -54.6 NC_006273.1 + 76707 0.66 0.979996
Target:  5'- aGCACUUuuUCuGCgACCCGCAGugcgCCg -3'
miRNA:   3'- -CGUGAGccAGuCG-UGGGCGUCuua-GG- -5'
29927 3' -54.6 NC_006273.1 + 194691 0.66 0.979996
Target:  5'- aGCGC-CGGacaCAGCACgCCGCaaacgcgcugaGGAcgCCg -3'
miRNA:   3'- -CGUGaGCCa--GUCGUG-GGCG-----------UCUuaGG- -5'
29927 3' -54.6 NC_006273.1 + 196776 0.66 0.977787
Target:  5'- -uGCUCGGgguccauguggCGGCACagCCGCAGGcgCUc -3'
miRNA:   3'- cgUGAGCCa----------GUCGUG--GGCGUCUuaGG- -5'
29927 3' -54.6 NC_006273.1 + 22768 0.66 0.977787
Target:  5'- uGCugUgGGUCAGCAagauCUacaGCGGAcucuacGUCCu -3'
miRNA:   3'- -CGugAgCCAGUCGU----GGg--CGUCU------UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.