miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29927 5' -58.5 NC_006273.1 + 48830 0.66 0.885798
Target:  5'- aGGGCcugaagcuCCUGCGGCCAcaGGUgCGUAGc -3'
miRNA:   3'- gCCCG--------GGACGCCGGUacCUA-GUAUCa -5'
29927 5' -58.5 NC_006273.1 + 91444 0.66 0.876305
Target:  5'- gCGGGCCCcaccggcgcuagcGCGGUuaguuccuCGUGGcUCAUGGUg -3'
miRNA:   3'- -GCCCGGGa------------CGCCG--------GUACCuAGUAUCA- -5'
29927 5' -58.5 NC_006273.1 + 33238 0.66 0.864972
Target:  5'- aGGGCCCcgggGCGGCgAcgacggcGGGUCcgAGUu -3'
miRNA:   3'- gCCCGGGa---CGCCGgUa------CCUAGuaUCA- -5'
29927 5' -58.5 NC_006273.1 + 197298 0.66 0.864247
Target:  5'- cCGGGCCCUGCGuucaagacggcguGCCGUGacgcUCgAUGGg -3'
miRNA:   3'- -GCCCGGGACGC-------------CGGUACcu--AG-UAUCa -5'
29927 5' -58.5 NC_006273.1 + 155733 0.67 0.823188
Target:  5'- aGGGCCUgucgcucgagaagGUGGCCGUGGAcuuUGGg -3'
miRNA:   3'- gCCCGGGa------------CGCCGGUACCUaguAUCa -5'
29927 5' -58.5 NC_006273.1 + 141077 0.68 0.809859
Target:  5'- cCGGGCCU--CGGCCggGGAggGUGGg -3'
miRNA:   3'- -GCCCGGGacGCCGGuaCCUagUAUCa -5'
29927 5' -58.5 NC_006273.1 + 200051 0.68 0.796148
Target:  5'- cCGGGCgCCUccgaguccauaucccGCGGCC-UGGGUguUAGa -3'
miRNA:   3'- -GCCCG-GGA---------------CGCCGGuACCUAguAUCa -5'
29927 5' -58.5 NC_006273.1 + 108320 0.68 0.774932
Target:  5'- cCGGG-CCUGCGGCC-UGGGacUCAa--- -3'
miRNA:   3'- -GCCCgGGACGCCGGuACCU--AGUauca -5'
29927 5' -58.5 NC_006273.1 + 167451 0.69 0.747468
Target:  5'- aGGGCCugCUGCGuCuCAUGGAUCAggAGUu -3'
miRNA:   3'- gCCCGG--GACGCcG-GUACCUAGUa-UCA- -5'
29927 5' -58.5 NC_006273.1 + 33279 0.69 0.738115
Target:  5'- gGGGCCUUGCGGCgGcagcGGuuggCGUGGUu -3'
miRNA:   3'- gCCCGGGACGCCGgUa---CCua--GUAUCA- -5'
29927 5' -58.5 NC_006273.1 + 65574 0.7 0.660897
Target:  5'- gGGGCCCUGcCGGCCcUGGGcCGc--- -3'
miRNA:   3'- gCCCGGGAC-GCCGGuACCUaGUauca -5'
29927 5' -58.5 NC_006273.1 + 149712 0.72 0.543521
Target:  5'- -uGGCUCU-CGGCCGUGGGUCAUGu- -3'
miRNA:   3'- gcCCGGGAcGCCGGUACCUAGUAUca -5'
29927 5' -58.5 NC_006273.1 + 191095 0.74 0.475312
Target:  5'- uGGGCCaUGCGGCCGUGGcguaacuguugaaaAUCAUGa- -3'
miRNA:   3'- gCCCGGgACGCCGGUACC--------------UAGUAUca -5'
29927 5' -58.5 NC_006273.1 + 67883 1.07 0.003231
Target:  5'- uCGGGCCCUGCGGCCAUGGAUCAUAGUg -3'
miRNA:   3'- -GCCCGGGACGCCGGUACCUAGUAUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.