Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 54812 | 0.66 | 0.994531 |
Target: 5'- aCUUGCCAUAUgucccAUAGC-CGUCCGu-- -3' miRNA: 3'- aGGACGGUGUA-----UAUCGaGCAGGUgug -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 233349 | 0.66 | 0.990503 |
Target: 5'- cUCCUGCCAUcgcgcacGGCgCGUCCcCGCc -3' miRNA: 3'- -AGGACGGUGuaua---UCGaGCAGGuGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 137777 | 0.66 | 0.993685 |
Target: 5'- ---gGCCACGUAcaucGGCgUCGUCgACGCa -3' miRNA: 3'- aggaCGGUGUAUa---UCG-AGCAGgUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 23474 | 0.66 | 0.993685 |
Target: 5'- gUCUggGCCugGUGcUGGCUUuUCCGCAUc -3' miRNA: 3'- -AGGa-CGGugUAU-AUCGAGcAGGUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 15670 | 0.66 | 0.99168 |
Target: 5'- -aCUGCCugGUGacgacgcGUUCGUCgACGCg -3' miRNA: 3'- agGACGGugUAUau-----CGAGCAGgUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 49958 | 0.66 | 0.994531 |
Target: 5'- gCCagGCCACGUGcAGC-CGggugCCGCAUu -3' miRNA: 3'- aGGa-CGGUGUAUaUCGaGCa---GGUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 96030 | 0.66 | 0.990503 |
Target: 5'- uUCCUGCCGCucAUGGCcuucugCGgccgCCAcCGCg -3' miRNA: 3'- -AGGACGGUGuaUAUCGa-----GCa---GGU-GUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 38456 | 0.66 | 0.990503 |
Target: 5'- cUCCUGCCAUcgcgcacGGCgCGUCCcCGCc -3' miRNA: 3'- -AGGACGGUGuaua---UCGaGCAGGuGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 163698 | 0.66 | 0.99168 |
Target: 5'- gCCUGCCACGUc-GGCgg--CCACAUu -3' miRNA: 3'- aGGACGGUGUAuaUCGagcaGGUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 29371 | 0.66 | 0.9892 |
Target: 5'- cUCCcacCCGgAUGUAGCggUCGUCgCGCACg -3' miRNA: 3'- -AGGac-GGUgUAUAUCG--AGCAG-GUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 190540 | 0.67 | 0.984445 |
Target: 5'- cUCCUacGCCACGcgauUGGCcgucggCGUCCGCAg -3' miRNA: 3'- -AGGA--CGGUGUau--AUCGa-----GCAGGUGUg -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 73506 | 0.67 | 0.980486 |
Target: 5'- cCUUGCCAUc----GC-CGUCCACGCa -3' miRNA: 3'- aGGACGGUGuauauCGaGCAGGUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 111330 | 0.67 | 0.987762 |
Target: 5'- gCCUGgCCGCA--UAGCgCGgCCGCGCc -3' miRNA: 3'- aGGAC-GGUGUauAUCGaGCaGGUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 218407 | 0.67 | 0.984445 |
Target: 5'- -aCUGCCGCGcGUAGUcgCGgUCUACGCc -3' miRNA: 3'- agGACGGUGUaUAUCGa-GC-AGGUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 74278 | 0.67 | 0.987762 |
Target: 5'- gUCgaGCCACAcggAGUagUCGUCCuCACg -3' miRNA: 3'- -AGgaCGGUGUauaUCG--AGCAGGuGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 174092 | 0.67 | 0.984445 |
Target: 5'- gCCUGCUcgaaaGCGUGUacacGGcCUCGgCCGCGCg -3' miRNA: 3'- aGGACGG-----UGUAUA----UC-GAGCaGGUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 159998 | 0.67 | 0.98618 |
Target: 5'- gCC-GCCGCAcGUGGUUUcuUCCGCACa -3' miRNA: 3'- aGGaCGGUGUaUAUCGAGc-AGGUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 68739 | 0.68 | 0.97582 |
Target: 5'- -aCUGCCAac---GGCgCGUCCACGCc -3' miRNA: 3'- agGACGGUguauaUCGaGCAGGUGUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 137051 | 0.68 | 0.970386 |
Target: 5'- gCCUGCCACGUGccacGGaacaUGUCCugGCg -3' miRNA: 3'- aGGACGGUGUAUa---UCga--GCAGGugUG- -5' |
|||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 113908 | 0.68 | 0.967364 |
Target: 5'- cCCUGCCGCGUcaccGUguguccacucugGGCUCGUCCc--- -3' miRNA: 3'- aGGACGGUGUA----UA------------UCGAGCAGGugug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home