miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29928 3' -52.4 NC_006273.1 + 66221 1.11 0.006441
Target:  5'- cUCCUGCCACAUAUAGCUCGUCCACACg -3'
miRNA:   3'- -AGGACGGUGUAUAUCGAGCAGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 44359 0.75 0.723183
Target:  5'- aUCCUGCCGgAc--GGUUCGUCCACGg -3'
miRNA:   3'- -AGGACGGUgUauaUCGAGCAGGUGUg -5'
29928 3' -52.4 NC_006273.1 + 210068 0.73 0.817215
Target:  5'- cCCUGCgacuCACAUcUAGCUCGUCUucugACGCu -3'
miRNA:   3'- aGGACG----GUGUAuAUCGAGCAGG----UGUG- -5'
29928 3' -52.4 NC_006273.1 + 194704 0.73 0.825826
Target:  5'- cCCUGCCACAUcgccGCU-GUCCAUGCu -3'
miRNA:   3'- aGGACGGUGUAuau-CGAgCAGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 162519 0.72 0.850559
Target:  5'- gUCUGCaCACc-GUGGC-CGUCCGCACg -3'
miRNA:   3'- aGGACG-GUGuaUAUCGaGCAGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 121745 0.72 0.866057
Target:  5'- gCCUGCCACAUc--GCUUGcCCgACGCg -3'
miRNA:   3'- aGGACGGUGUAuauCGAGCaGG-UGUG- -5'
29928 3' -52.4 NC_006273.1 + 173300 0.7 0.924718
Target:  5'- uUCUUGCCGCGgc--GCUCgGUCgACGCg -3'
miRNA:   3'- -AGGACGGUGUauauCGAG-CAGgUGUG- -5'
29928 3' -52.4 NC_006273.1 + 137192 0.7 0.924718
Target:  5'- -gCUGCCGCucagcgAGCUCGUCgccaGCGCg -3'
miRNA:   3'- agGACGGUGuaua--UCGAGCAGg---UGUG- -5'
29928 3' -52.4 NC_006273.1 + 165205 0.7 0.939986
Target:  5'- gUCgUaGCCGCGgcacAGgUCGUCCACGCa -3'
miRNA:   3'- -AGgA-CGGUGUaua-UCgAGCAGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 176527 0.7 0.941858
Target:  5'- gCCUGCCGCcgugcuugagucccgAUAUGGCgUCGUgCCACu- -3'
miRNA:   3'- aGGACGGUG---------------UAUAUCG-AGCA-GGUGug -5'
29928 3' -52.4 NC_006273.1 + 166918 0.69 0.960677
Target:  5'- gCCUGUgGCGUGUgcGGCaUCGUCUGCGu -3'
miRNA:   3'- aGGACGgUGUAUA--UCG-AGCAGGUGUg -5'
29928 3' -52.4 NC_006273.1 + 81515 0.69 0.965449
Target:  5'- aCCUGCaGCAUGUAGCgcagcauaaggCCGCACu -3'
miRNA:   3'- aGGACGgUGUAUAUCGagca-------GGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 118999 0.68 0.967364
Target:  5'- gCCUGCgACugcu-GCUCGUCCAUc- -3'
miRNA:   3'- aGGACGgUGuauauCGAGCAGGUGug -5'
29928 3' -52.4 NC_006273.1 + 113908 0.68 0.967364
Target:  5'- cCCUGCCGCGUcaccGUguguccacucugGGCUCGUCCc--- -3'
miRNA:   3'- aGGACGGUGUA----UA------------UCGAGCAGGugug -5'
29928 3' -52.4 NC_006273.1 + 137051 0.68 0.970386
Target:  5'- gCCUGCCACGUGccacGGaacaUGUCCugGCg -3'
miRNA:   3'- aGGACGGUGUAUa---UCga--GCAGGugUG- -5'
29928 3' -52.4 NC_006273.1 + 170490 0.68 0.973203
Target:  5'- cCCggaCACAUGUAGC-CGUCCaggucGCACg -3'
miRNA:   3'- aGGacgGUGUAUAUCGaGCAGG-----UGUG- -5'
29928 3' -52.4 NC_006273.1 + 165717 0.68 0.97582
Target:  5'- cUCCUGCUGCGUGUcgaugcGCUgGUgCCAgGCg -3'
miRNA:   3'- -AGGACGGUGUAUAu-----CGAgCA-GGUgUG- -5'
29928 3' -52.4 NC_006273.1 + 68739 0.68 0.97582
Target:  5'- -aCUGCCAac---GGCgCGUCCACGCc -3'
miRNA:   3'- agGACGGUguauaUCGaGCAGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 72401 0.68 0.978245
Target:  5'- -gCUGCCGcCGUcgAGcCUCcUCCGCGCg -3'
miRNA:   3'- agGACGGU-GUAuaUC-GAGcAGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 135330 0.68 0.978245
Target:  5'- gCCUGUgACAUGaGGCaCGUCCagaACGCg -3'
miRNA:   3'- aGGACGgUGUAUaUCGaGCAGG---UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.