miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29928 3' -52.4 NC_006273.1 + 137192 0.7 0.924718
Target:  5'- -gCUGCCGCucagcgAGCUCGUCgccaGCGCg -3'
miRNA:   3'- agGACGGUGuaua--UCGAGCAGg---UGUG- -5'
29928 3' -52.4 NC_006273.1 + 137777 0.66 0.993685
Target:  5'- ---gGCCACGUAcaucGGCgUCGUCgACGCa -3'
miRNA:   3'- aggaCGGUGUAUa---UCG-AGCAGgUGUG- -5'
29928 3' -52.4 NC_006273.1 + 159998 0.67 0.98618
Target:  5'- gCC-GCCGCAcGUGGUUUcuUCCGCACa -3'
miRNA:   3'- aGGaCGGUGUaUAUCGAGc-AGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 162519 0.72 0.850559
Target:  5'- gUCUGCaCACc-GUGGC-CGUCCGCACg -3'
miRNA:   3'- aGGACG-GUGuaUAUCGaGCAGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 163698 0.66 0.99168
Target:  5'- gCCUGCCACGUc-GGCgg--CCACAUu -3'
miRNA:   3'- aGGACGGUGUAuaUCGagcaGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 165205 0.7 0.939986
Target:  5'- gUCgUaGCCGCGgcacAGgUCGUCCACGCa -3'
miRNA:   3'- -AGgA-CGGUGUaua-UCgAGCAGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 165717 0.68 0.97582
Target:  5'- cUCCUGCUGCGUGUcgaugcGCUgGUgCCAgGCg -3'
miRNA:   3'- -AGGACGGUGUAUAu-----CGAgCA-GGUgUG- -5'
29928 3' -52.4 NC_006273.1 + 166918 0.69 0.960677
Target:  5'- gCCUGUgGCGUGUgcGGCaUCGUCUGCGu -3'
miRNA:   3'- aGGACGgUGUAUA--UCG-AGCAGGUGUg -5'
29928 3' -52.4 NC_006273.1 + 170490 0.68 0.973203
Target:  5'- cCCggaCACAUGUAGC-CGUCCaggucGCACg -3'
miRNA:   3'- aGGacgGUGUAUAUCGaGCAGG-----UGUG- -5'
29928 3' -52.4 NC_006273.1 + 173300 0.7 0.924718
Target:  5'- uUCUUGCCGCGgc--GCUCgGUCgACGCg -3'
miRNA:   3'- -AGGACGGUGUauauCGAG-CAGgUGUG- -5'
29928 3' -52.4 NC_006273.1 + 174092 0.67 0.984445
Target:  5'- gCCUGCUcgaaaGCGUGUacacGGcCUCGgCCGCGCg -3'
miRNA:   3'- aGGACGG-----UGUAUA----UC-GAGCaGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 176527 0.7 0.941858
Target:  5'- gCCUGCCGCcgugcuugagucccgAUAUGGCgUCGUgCCACu- -3'
miRNA:   3'- aGGACGGUG---------------UAUAUCG-AGCA-GGUGug -5'
29928 3' -52.4 NC_006273.1 + 190540 0.67 0.984445
Target:  5'- cUCCUacGCCACGcgauUGGCcgucggCGUCCGCAg -3'
miRNA:   3'- -AGGA--CGGUGUau--AUCGa-----GCAGGUGUg -5'
29928 3' -52.4 NC_006273.1 + 194704 0.73 0.825826
Target:  5'- cCCUGCCACAUcgccGCU-GUCCAUGCu -3'
miRNA:   3'- aGGACGGUGUAuau-CGAgCAGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 210068 0.73 0.817215
Target:  5'- cCCUGCgacuCACAUcUAGCUCGUCUucugACGCu -3'
miRNA:   3'- aGGACG----GUGUAuAUCGAGCAGG----UGUG- -5'
29928 3' -52.4 NC_006273.1 + 218407 0.67 0.984445
Target:  5'- -aCUGCCGCGcGUAGUcgCGgUCUACGCc -3'
miRNA:   3'- agGACGGUGUaUAUCGa-GC-AGGUGUG- -5'
29928 3' -52.4 NC_006273.1 + 233349 0.66 0.990503
Target:  5'- cUCCUGCCAUcgcgcacGGCgCGUCCcCGCc -3'
miRNA:   3'- -AGGACGGUGuaua---UCGaGCAGGuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.