Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 121745 | 0.72 | 0.866057 |
Target: 5'- gCCUGCCACAUc--GCUUGcCCgACGCg -3' miRNA: 3'- aGGACGGUGUAuauCGAGCaGG-UGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 49958 | 0.66 | 0.994531 |
Target: 5'- gCCagGCCACGUGcAGC-CGggugCCGCAUu -3' miRNA: 3'- aGGa-CGGUGUAUaUCGaGCa---GGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 137777 | 0.66 | 0.993685 |
Target: 5'- ---gGCCACGUAcaucGGCgUCGUCgACGCa -3' miRNA: 3'- aggaCGGUGUAUa---UCG-AGCAGgUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 233349 | 0.66 | 0.990503 |
Target: 5'- cUCCUGCCAUcgcgcacGGCgCGUCCcCGCc -3' miRNA: 3'- -AGGACGGUGuaua---UCGaGCAGGuGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 29371 | 0.66 | 0.9892 |
Target: 5'- cUCCcacCCGgAUGUAGCggUCGUCgCGCACg -3' miRNA: 3'- -AGGac-GGUgUAUAUCG--AGCAG-GUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 111330 | 0.67 | 0.987762 |
Target: 5'- gCCUGgCCGCA--UAGCgCGgCCGCGCc -3' miRNA: 3'- aGGAC-GGUGUauAUCGaGCaGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 218407 | 0.67 | 0.984445 |
Target: 5'- -aCUGCCGCGcGUAGUcgCGgUCUACGCc -3' miRNA: 3'- agGACGGUGUaUAUCGa-GC-AGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 72401 | 0.68 | 0.978245 |
Target: 5'- -gCUGCCGcCGUcgAGcCUCcUCCGCGCg -3' miRNA: 3'- agGACGGU-GUAuaUC-GAGcAGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 135330 | 0.68 | 0.978245 |
Target: 5'- gCCUGUgACAUGaGGCaCGUCCagaACGCg -3' miRNA: 3'- aGGACGgUGUAUaUCGaGCAGG---UGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 137192 | 0.7 | 0.924718 |
Target: 5'- -gCUGCCGCucagcgAGCUCGUCgccaGCGCg -3' miRNA: 3'- agGACGGUGuaua--UCGAGCAGg---UGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 165205 | 0.7 | 0.939986 |
Target: 5'- gUCgUaGCCGCGgcacAGgUCGUCCACGCa -3' miRNA: 3'- -AGgA-CGGUGUaua-UCgAGCAGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 166918 | 0.69 | 0.960677 |
Target: 5'- gCCUGUgGCGUGUgcGGCaUCGUCUGCGu -3' miRNA: 3'- aGGACGgUGUAUA--UCG-AGCAGGUGUg -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 113908 | 0.68 | 0.967364 |
Target: 5'- cCCUGCCGCGUcaccGUguguccacucugGGCUCGUCCc--- -3' miRNA: 3'- aGGACGGUGUA----UA------------UCGAGCAGGugug -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 137051 | 0.68 | 0.970386 |
Target: 5'- gCCUGCCACGUGccacGGaacaUGUCCugGCg -3' miRNA: 3'- aGGACGGUGUAUa---UCga--GCAGGugUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 68739 | 0.68 | 0.97582 |
Target: 5'- -aCUGCCAac---GGCgCGUCCACGCc -3' miRNA: 3'- agGACGGUguauaUCGaGCAGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 54812 | 0.66 | 0.994531 |
Target: 5'- aCUUGCCAUAUgucccAUAGC-CGUCCGu-- -3' miRNA: 3'- aGGACGGUGUA-----UAUCGaGCAGGUgug -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 44359 | 0.75 | 0.723183 |
Target: 5'- aUCCUGCCGgAc--GGUUCGUCCACGg -3' miRNA: 3'- -AGGACGGUgUauaUCGAGCAGGUGUg -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 210068 | 0.73 | 0.817215 |
Target: 5'- cCCUGCgacuCACAUcUAGCUCGUCUucugACGCu -3' miRNA: 3'- aGGACG----GUGUAuAUCGAGCAGG----UGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 194704 | 0.73 | 0.825826 |
Target: 5'- cCCUGCCACAUcgccGCU-GUCCAUGCu -3' miRNA: 3'- aGGACGGUGUAuau-CGAgCAGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 162519 | 0.72 | 0.850559 |
Target: 5'- gUCUGCaCACc-GUGGC-CGUCCGCACg -3' miRNA: 3'- aGGACG-GUGuaUAUCGaGCAGGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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