Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29928 | 3' | -52.4 | NC_006273.1 | + | 176527 | 0.7 | 0.941858 |
Target: 5'- gCCUGCCGCcgugcuugagucccgAUAUGGCgUCGUgCCACu- -3' miRNA: 3'- aGGACGGUG---------------UAUAUCG-AGCA-GGUGug -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 96030 | 0.66 | 0.990503 |
Target: 5'- uUCCUGCCGCucAUGGCcuucugCGgccgCCAcCGCg -3' miRNA: 3'- -AGGACGGUGuaUAUCGa-----GCa---GGU-GUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 163698 | 0.66 | 0.99168 |
Target: 5'- gCCUGCCACGUc-GGCgg--CCACAUu -3' miRNA: 3'- aGGACGGUGUAuaUCGagcaGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 54812 | 0.66 | 0.994531 |
Target: 5'- aCUUGCCAUAUgucccAUAGC-CGUCCGu-- -3' miRNA: 3'- aGGACGGUGUA-----UAUCGaGCAGGUgug -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 66221 | 1.11 | 0.006441 |
Target: 5'- cUCCUGCCACAUAUAGCUCGUCCACACg -3' miRNA: 3'- -AGGACGGUGUAUAUCGAGCAGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 44359 | 0.75 | 0.723183 |
Target: 5'- aUCCUGCCGgAc--GGUUCGUCCACGg -3' miRNA: 3'- -AGGACGGUgUauaUCGAGCAGGUGUg -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 210068 | 0.73 | 0.817215 |
Target: 5'- cCCUGCgacuCACAUcUAGCUCGUCUucugACGCu -3' miRNA: 3'- aGGACG----GUGUAuAUCGAGCAGG----UGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 194704 | 0.73 | 0.825826 |
Target: 5'- cCCUGCCACAUcgccGCU-GUCCAUGCu -3' miRNA: 3'- aGGACGGUGUAuau-CGAgCAGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 162519 | 0.72 | 0.850559 |
Target: 5'- gUCUGCaCACc-GUGGC-CGUCCGCACg -3' miRNA: 3'- aGGACG-GUGuaUAUCGaGCAGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 38456 | 0.66 | 0.990503 |
Target: 5'- cUCCUGCCAUcgcgcacGGCgCGUCCcCGCc -3' miRNA: 3'- -AGGACGGUGuaua---UCGaGCAGGuGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 190540 | 0.67 | 0.984445 |
Target: 5'- cUCCUacGCCACGcgauUGGCcgucggCGUCCGCAg -3' miRNA: 3'- -AGGA--CGGUGUau--AUCGa-----GCAGGUGUg -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 174092 | 0.67 | 0.984445 |
Target: 5'- gCCUGCUcgaaaGCGUGUacacGGcCUCGgCCGCGCg -3' miRNA: 3'- aGGACGG-----UGUAUA----UC-GAGCaGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 81515 | 0.69 | 0.965449 |
Target: 5'- aCCUGCaGCAUGUAGCgcagcauaaggCCGCACu -3' miRNA: 3'- aGGACGgUGUAUAUCGagca-------GGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 159998 | 0.67 | 0.98618 |
Target: 5'- gCC-GCCGCAcGUGGUUUcuUCCGCACa -3' miRNA: 3'- aGGaCGGUGUaUAUCGAGc-AGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 118999 | 0.68 | 0.967364 |
Target: 5'- gCCUGCgACugcu-GCUCGUCCAUc- -3' miRNA: 3'- aGGACGgUGuauauCGAGCAGGUGug -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 73506 | 0.67 | 0.980486 |
Target: 5'- cCUUGCCAUc----GC-CGUCCACGCa -3' miRNA: 3'- aGGACGGUGuauauCGaGCAGGUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 74278 | 0.67 | 0.987762 |
Target: 5'- gUCgaGCCACAcggAGUagUCGUCCuCACg -3' miRNA: 3'- -AGgaCGGUGUauaUCG--AGCAGGuGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 15670 | 0.66 | 0.99168 |
Target: 5'- -aCUGCCugGUGacgacgcGUUCGUCgACGCg -3' miRNA: 3'- agGACGGugUAUau-----CGAGCAGgUGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 170490 | 0.68 | 0.973203 |
Target: 5'- cCCggaCACAUGUAGC-CGUCCaggucGCACg -3' miRNA: 3'- aGGacgGUGUAUAUCGaGCAGG-----UGUG- -5' |
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29928 | 3' | -52.4 | NC_006273.1 | + | 165717 | 0.68 | 0.97582 |
Target: 5'- cUCCUGCUGCGUGUcgaugcGCUgGUgCCAgGCg -3' miRNA: 3'- -AGGACGGUGUAUAu-----CGAgCA-GGUgUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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