miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29928 5' -51.7 NC_006273.1 + 50589 0.66 0.99712
Target:  5'- -gACACGGcCGGCAUGUacgaaUgCGUGCUg -3'
miRNA:   3'- agUGUGCC-GUUGUACAca---AgGCACGA- -5'
29928 5' -51.7 NC_006273.1 + 39699 0.66 0.99712
Target:  5'- aCACGCGGaCGGCuccGUcgUCCGUGUg -3'
miRNA:   3'- aGUGUGCC-GUUGua-CAcaAGGCACGa -5'
29928 5' -51.7 NC_006273.1 + 234591 0.66 0.99712
Target:  5'- aCACGCGGaCGGCuccGUcgUCCGUGUg -3'
miRNA:   3'- aGUGUGCC-GUUGua-CAcaAGGCACGa -5'
29928 5' -51.7 NC_006273.1 + 78347 0.66 0.996616
Target:  5'- gCACACGGcCGACG-GUGguuUCCGcGCc -3'
miRNA:   3'- aGUGUGCC-GUUGUaCACa--AGGCaCGa -5'
29928 5' -51.7 NC_006273.1 + 188764 0.66 0.995388
Target:  5'- aCACGauaGGCAGCGUGgucgGcUCCGUcgGCg -3'
miRNA:   3'- aGUGUg--CCGUUGUACa---CaAGGCA--CGa -5'
29928 5' -51.7 NC_006273.1 + 116615 0.66 0.995388
Target:  5'- aCAUggACGGCGACGUGcGUaCCGcgGCa -3'
miRNA:   3'- aGUG--UGCCGUUGUACaCAaGGCa-CGa -5'
29928 5' -51.7 NC_006273.1 + 144223 0.66 0.99465
Target:  5'- -gGCACGGCGgcucggacgacuACGUGUGgcucagCCGguUGCUg -3'
miRNA:   3'- agUGUGCCGU------------UGUACACaa----GGC--ACGA- -5'
29928 5' -51.7 NC_006273.1 + 39601 0.67 0.993819
Target:  5'- -gGCGCGGCGACAUG----CCGuUGCg -3'
miRNA:   3'- agUGUGCCGUUGUACacaaGGC-ACGa -5'
29928 5' -51.7 NC_006273.1 + 234494 0.67 0.993819
Target:  5'- -gGCGCGGCGACAUG----CCGuUGCg -3'
miRNA:   3'- agUGUGCCGUUGUACacaaGGC-ACGa -5'
29928 5' -51.7 NC_006273.1 + 64900 0.67 0.993819
Target:  5'- -uGgACGGCuACAUGUG-UCCGgGCa -3'
miRNA:   3'- agUgUGCCGuUGUACACaAGGCaCGa -5'
29928 5' -51.7 NC_006273.1 + 125525 0.67 0.992888
Target:  5'- gUCAgACGGC-ACggGUuuucgaugaguuGUUCCGUGCc -3'
miRNA:   3'- -AGUgUGCCGuUGuaCA------------CAAGGCACGa -5'
29928 5' -51.7 NC_006273.1 + 70695 0.67 0.990691
Target:  5'- gCGCGCGGCAACucgagaugGUGUacCCG-GCa -3'
miRNA:   3'- aGUGUGCCGUUGua------CACAa-GGCaCGa -5'
29928 5' -51.7 NC_006273.1 + 115555 0.67 0.989409
Target:  5'- cCGCACGGCucACcacUGggCCGUGCg -3'
miRNA:   3'- aGUGUGCCGu-UGuacACaaGGCACGa -5'
29928 5' -51.7 NC_006273.1 + 217199 0.68 0.987993
Target:  5'- aCGCAgGGCAguuccugcgccuGCuugGUGUUUCGUGUUa -3'
miRNA:   3'- aGUGUgCCGU------------UGua-CACAAGGCACGA- -5'
29928 5' -51.7 NC_006273.1 + 114310 0.68 0.982858
Target:  5'- gUUACGCGGCcGCccGUG-UCCGUGa- -3'
miRNA:   3'- -AGUGUGCCGuUGuaCACaAGGCACga -5'
29928 5' -51.7 NC_006273.1 + 150147 0.68 0.980822
Target:  5'- -gGCACGGCGACG-GUGUcuccUCCGU-CUu -3'
miRNA:   3'- agUGUGCCGUUGUaCACA----AGGCAcGA- -5'
29928 5' -51.7 NC_006273.1 + 71849 0.69 0.976218
Target:  5'- aCACACGGCcggggaggAGCAgcugGUGUUUCGacUGCg -3'
miRNA:   3'- aGUGUGCCG--------UUGUa---CACAAGGC--ACGa -5'
29928 5' -51.7 NC_006273.1 + 52942 0.69 0.970851
Target:  5'- -aACugGGCAACGaaUGcUGUccUCCGUGUg -3'
miRNA:   3'- agUGugCCGUUGU--AC-ACA--AGGCACGa -5'
29928 5' -51.7 NC_006273.1 + 104525 0.7 0.964667
Target:  5'- gUCGCGCGGCAgugACAgcuUGUGacCCGcGCUc -3'
miRNA:   3'- -AGUGUGCCGU---UGU---ACACaaGGCaCGA- -5'
29928 5' -51.7 NC_006273.1 + 197672 0.7 0.964667
Target:  5'- cUACGCGGCGACAgcUGcUuuGUGCa -3'
miRNA:   3'- aGUGUGCCGUUGUacACaAggCACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.